PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g010860.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Trihelix
Protein Properties Length: 637aa    MW: 69914 Da    PI: 6.3853
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g010860.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix66.17.6e-21159244186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W++  + +L++a++++ ++l+rg+l++ +We+v++ +  r  ++++s +qCk+k++nl+kryk ++++++++  +sss++p+f+++e
  Csa01g010860.1 159 EWSDAAIACLLDAYSDKFTQLNRGNLRGRDWEDVASTVseRCDKLSKSVEQCKNKIDNLKKRYKLERHRMSGG--TSSSNWPWFKKME 244
                     5*************************************777789****************************8..57789*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.3E-22157246No hitNo description
Gene3DG3DSA:3.40.1160.101.1E-55293507IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536332.49E-43299507IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042549.45E-105301629No hitNo description
PfamPF006962.7E-22302504IPR001048Aspartate/glutamate/uridylate kinase
Sequence ? help Back to Top
Protein Sequence    Length: 637 aa     Download sequence    Send to blast
MASCDDDFSL LGDDQSNPNQ HQHHHHHQVL HHTPYATRRF TPKPSNQIHL SHHHQRNGDE  60
DDENDVVVEA SSAFHGVNPF VADENSNPYD DNNAAVDEDE DLDADRSRVG GARLEKRQRQ  120
EELSDGGTTN GGETTPYGSF KRPRTSSSSA SEYRKDREEW SDAAIACLLD AYSDKFTQLN  180
RGNLRGRDWE DVASTVSERC DKLSKSVEQC KNKIDNLKKR YKLERHRMSG GTSSSNWPWF  240
KKMEDIVGNS LAAKGASDED RSGSSMGNPV KPARRYPLVT YNPPVQINNV KPKANSHPRW  300
RRVVLKISGA ALACTGPNNI DPKVINLIAR EVAMACRLGV EVAIVVGSRN FFCGSTWITA  360
TGLDRTTAYH ISMMASVMNS ALLQSSLEKI GVQARLQTAI SVQGVGEPYN RQRATRHLDK  420
GRVVIFGGIG ATLGNPLLSS DASAALRAID INAEAVVKGT NVDGVYDCHS QDSNVTFEHI  480
TFQDLASRGL TSMDTMALNF CEENSLPGRD LSLSLSLIMN SDSTRFXEEL SDGGTTNGGE  540
TTPYGSFKRP RTSSSSASEY RKDREEWSDA AIACLLDAYS DKFTQLNRGN LRGRDWEDVA  600
STVIVVFNFL EAGNITKALC GEQVGTLIDR NGRGGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A2e-502945143221Uridylate kinase
3ek5_B2e-502945143221Uridylate kinase
3ek5_C2e-502945143221Uridylate kinase
3ek5_D2e-502945143221Uridylate kinase
3ek5_E2e-502945143221Uridylate kinase
3ek5_F2e-502945143221Uridylate kinase
3ek6_A2e-502945143221Uridylate kinase
3ek6_B2e-502945143221Uridylate kinase
3ek6_C2e-502945143221Uridylate kinase
3ek6_D2e-502945143221Uridylate kinase
3ek6_E2e-502945143221Uridylate kinase
3ek6_F2e-502945143221Uridylate kinase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g010860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3754310.0AF375431.1 Arabidopsis thaliana AT3g10030/T22K18_15 mRNA, complete cds.
GenBankAY1206870.0AY120687.1 Arabidopsis thaliana AT3g10030/T22K18_15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010480055.10.0PREDICTED: uncharacterized protein LOC104758773
TrEMBLQ9SR680.0Q9SR68_ARATH; Aspartate/glutamate/uridylate kinase family protein
STRINGXP_010480055.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93052631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.20.0Trihelix family protein