PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g011350.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 392aa    MW: 42356.7 Da    PI: 7.4374
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g011350.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00046175197123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+++F++   L  H  +H
  Csa01g011350.1 175 YQCKTCDRTFPSFQALGGHRASH 197
                     9***********99999998887 PP
2zf-C2H2130.00031254276123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  F++   L  H+r+H
  Csa01g011350.1 254 HECGICGAEFTSGQALGGHMRRH 276
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.95E-8174197No hitNo description
PfamPF139122.3E-12174199IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.471175202IPR007087Zinc finger, C2H2
SMARTSM003550.028175197IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280177197IPR007087Zinc finger, C2H2
SuperFamilySSF576671.95E-8249276No hitNo description
Gene3DG3DSA:3.30.160.608.0E-4252278IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.5E-11253278IPR007087Zinc finger, C2H2
SMARTSM003550.047254276IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.93254278IPR007087Zinc finger, C2H2
PROSITE patternPS000280256276IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MEAAAEAVSA AREQSLILKG KRTKRQRPQS PIPFSIIPPM SSQEPDAEEE STSLVSKEQN  60
LNDDINNNNN KNDNNTLING VTSSSSASSS SNNNVTLKAT IDEEDQDMAN CLILLAQGHS  120
LPHHQPQQTR QLMISYQESG NNNNAYRSSS RRFLETSSSN GTTANGGGRA GYYVYQCKTC  180
DRTFPSFQAL GGHRASHKKP KAATGLHSNH DLKKSIYDDP VSLHLNNVVT TTPNNNSNHR  240
SLVVYGKANN NKVHECGICG AEFTSGQALG GHMRRHRGAV VAAAAASTPT VAVVATTATA  300
NTALSLSPMS FDQMSDVPVQ VPVKRARSAV VSLDLDLNLP APEDENRVNG LSFASKQENE  360
QEHEQTQQKK QREEHKSLVL SSAPTLVDCH Y*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g011350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0115600.0AC011560.6 Arabidopsis thaliana chromosome 3 BAC F13M14 genomic sequence, complete sequence.
GenBankATAC0134280.0AC013428.6 Arabidopsis thaliana chromosome III BAC F18K10 genomic sequence, complete sequence.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010484714.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLR0HSD70.0R0HSD7_9BRAS; Uncharacterized protein
STRINGXP_010484714.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22312775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10470.11e-131C2H2 family protein