PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g011480.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 225aa    MW: 25680.6 Da    PI: 6.3486
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g011480.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.16.5e-1696140347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++d+ +++G+g+Wk+I+r+  k+R++ q+ s+ qky
   Csa01g011480.1  96 PWTPEEHRLFLDGLEKYGKGDWKSISRECVKTRSPMQVASHAQKY 140
                      7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.7354IPR001005SANT/Myb domain
SuperFamilySSF466896.6E-5655IPR009057Homeodomain-like
PROSITE profilePS5129417.88589145IPR017930Myb domain
SuperFamilySSF466895.17E-1890145IPR009057Homeodomain-like
TIGRFAMsTIGR015575.6E-1692144IPR006447Myb domain, plants
SMARTSM007176.5E-1193143IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-1194139IPR009057Homeodomain-like
PfamPF002491.6E-1296140IPR001005SANT/Myb domain
CDDcd001671.37E-1296140No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MVSIPRWTKE DNKHFEIALA QFPEGSPSIL ESIAEHLRKP VEEVKFYYDD LVYDVEQIET  60
GKVPLPKYRD DDDDYVSLKK AAESKSQGTG RKKGIPWTPE EHRLFLDGLE KYGKGDWKSI  120
SRECVKTRSP MQVASHAQKY YLRQSSDSKK GKRSSIHDVT LGHADNVTVP GSNLKSMGHQ  180
PHFGDQIPPD QYYQHYSQDN FGLFDDDAHG GCLPSYDELY SYKF*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00344DAPTransfer from AT3G10580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g011480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010486370.11e-167PREDICTED: transcription factor DIVARICATA-like
TrEMBLR0I6331e-110R0I633_9BRAS; Uncharacterized protein
STRINGXP_010486370.11e-166(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14731719
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10580.21e-94MYB_related family protein