PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g011490.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 192aa    MW: 21987.9 Da    PI: 8.3619
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g011490.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.21.8e-1391134447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      WT+eE+  ++++ +++G+g+Wk I+r+  k+R + q+ s+ qky
   Csa01g011490.1  91 WTEEEHRSFLEGLEKYGKGDWKNISRECVKTRNPMQVASHAQKY 134
                      *******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0071733354IPR001005SANT/Myb domain
PROSITE profilePS5129417.73383139IPR017930Myb domain
SMARTSM007172.5E-987137IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-1087133IPR009057Homeodomain-like
SuperFamilySSF466891.94E-1688139IPR009057Homeodomain-like
TIGRFAMsTIGR015576.7E-1589138IPR006447Myb domain, plants
PfamPF002495.0E-1091134IPR001005SANT/Myb domain
CDDcd001672.71E-1091134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MASIPQWTWD EHKRFEIAVA QSLVDSSSSL ENIAKLLKKP FEEVKYYYEA LVYDVGMIES  60
DNIALPKYRD DDYVSLKEAR KPIHIIKGRF WTEEEHRSFL EGLEKYGKGD WKNISRECVK  120
TRNPMQVASH AQKYYLRQSS DGKKGKRSSI HDITLGDIPG PNLKPMGGQP EFGGQIPPYQ  180
NYYSQNNVGP L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g011490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010418602.12e-98PREDICTED: transcription factor DIVARICATA-like
TrEMBLR0I6336e-71R0I633_9BRAS; Uncharacterized protein
STRINGXP_010418602.18e-98(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14731719
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10580.22e-68MYB_related family protein