PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g011500.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 192aa    MW: 22618.5 Da    PI: 6.3683
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g011500.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.33e-0775119147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +W++e +e ++ + k++G++ W++Ia  +  ++ + q+  + +ky
   Csa01g011500.1  75 RTKWSKETHEWFLIGLKRYGKD-WRKIAILLD-TKNPMQVAMYAHKY 119
                      789*****************99.********9.99999988887777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.2253IPR001005SANT/Myb domain
SuperFamilySSF466892.39E-7455IPR009057Homeodomain-like
PROSITE profilePS5129412.40170124IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-572123IPR009057Homeodomain-like
SuperFamilySSF466893.59E-973125IPR009057Homeodomain-like
SMARTSM007172.6E-574122IPR001005SANT/Myb domain
CDDcd001672.03E-477120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MAENSWTREE NEKFKDSLVV FSAFLPTRFE KIAEYLQKPV PDVKKHYEEM VNDLLRGIAF  60
PNELNEAQSS YEAERTKWSK ETHEWFLIGL KRYGKDWRKI AILLDTKNPM QVAMYAHKYF  120
NWQNSEKNVI DSPRANDIPD LVDNKIVNDV MKRRRHNNIT LVDNNVDSTG QEELIHPQWQ  180
PQQEPVVRSP C*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g011500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010418615.11e-141PREDICTED: transcription factor DIVARICATA-like
TrEMBLD7L9133e-84D7L913_ARALL; Predicted protein
STRINGXP_010418615.11e-141(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15934911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.16e-25MYB family protein