PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g012120.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Trihelix
Protein Properties Length: 257aa    MW: 29103.6 Da    PI: 5.5392
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g012120.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix44.93e-1428108286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     W+++ + +Liea  ++  +l+rg+l++++W+ev++++   +  g  ++ +qCk++++ l+k+yk +k+  ++        + +fd+l+
  Csa01g012120.1  28 WSEDATATLIEAWGDRYVNLNRGNLRQNDWKEVADAVnasHGNGRPKTDVQCKNRIDTLKKKYKTEKAKPSS-------AWCFFDRLD 108
                     *************************************8655666788*******************998886.......488888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.9E-2526109No hitNo description
SMARTSM005950.002435115IPR006578MADF domain
Gene3DG3DSA:1.10.601.109.2E-4143229No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
METTPETHPK PHNQSRSNRL PAGREDWWSE DATATLIEAW GDRYVNLNRG NLRQNDWKEV  60
ADAVNASHGN GRPKTDVQCK NRIDTLKKKY KTEKAKPSSA WCFFDRLDFL IGPVVKKPSG  120
GVVKSALMNP NLNPAGSKST GSSLDDDDDD DDDDDDEDDD DAGDWGFVVR KHRRVEDVDP  180
SEGSAFRELA RSILKLGEAF ERIEGKKQRM MIELEKQRME VAKDLELQRM NMLIEMQLEL  240
EKSKLGKRRA CSGKKL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g012120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2546080.0AC254608.1 Capsella rubella clone CAP16-D12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010488545.10.0PREDICTED: trihelix transcription factor ASIL2-like isoform X2
SwissprotQ9LJG81e-32ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLR0G6K61e-153R0G6K6_9BRAS; Uncharacterized protein
STRINGXP_010488476.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49262141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11100.11e-136sequence-specific DNA binding transcription factors