PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g012180.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 401aa    MW: 45425 Da    PI: 8.6532
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g012180.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.12.3e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd  lv ++k +G g+W   a++ g+ R++ +c++rw++yl
   Csa01g012180.1 14 KGEWTAEEDRTLVAYIKVHGLGNWGILAKKAGLPRCGRSCRLRWLNYL 61
                     799*****************************99************97 PP
2Myb_DNA-binding41.82.6e-1367110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T++E+  +++++++ G++ W+ Ia+ ++ +Rt+ + k++w++
   Csa01g012180.1  67 RSKFTPQEENEIIKYHALIGNR-WAVIAKQLP-NRTDHDFKNHWNS 110
                      789*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.032961IPR017930Myb domain
SuperFamilySSF466897.34E-2811108IPR009057Homeodomain-like
SMARTSM007177.3E-141363IPR001005SANT/Myb domain
PfamPF002492.7E-121461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-221568IPR009057Homeodomain-like
CDDcd001671.65E-91661No hitNo description
PROSITE profilePS5129422.60562116IPR017930Myb domain
SMARTSM007172.1E-1166114IPR001005SANT/Myb domain
PfamPF002492.4E-1267111IPR001005SANT/Myb domain
CDDcd001674.74E-769109No hitNo description
Gene3DG3DSA:1.10.10.603.1E-2269116IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-7244277IPR009057Homeodomain-like
PROSITE profilePS500904.344245265IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MGRMTWFDAN GMKKGEWTAE EDRTLVAYIK VHGLGNWGIL AKKAGLPRCG RSCRLRWLNY  60
LRPGIKRSKF TPQEENEIIK YHALIGNRWA VIAKQLPNRT DHDFKNHWNS CLKKRLAKER  120
IDPMTHEPTV LTVEATSSST TPPSSTPRTT SSSFSSTGYA RLLNKLAASI ASRKYRLDKI  180
KMVIFSEEPR EASDKEKMLI TMEDEDLIAC FMDFDENLSK ALFCELPCHD STPTQCQLSK  240
FAEVIAKQLP NRTDHDFKNH WNSCLKKRLA KERIDPMTHE PTVLTVEATS SSTTPPSSTP  300
RTTSSSFSST GYARLLNKLA ASIASRKYRL DKIKMVIFSE EPREASDKEK MLITMEDEDL  360
IACFMDFDEN LSKALFCELP CHDSTPTQCQ LSKFAEGAKT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25141167108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g012180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010487946.11e-164PREDICTED: transcription factor MYB34-like
TrEMBLR0I0D01e-127R0I0D0_9BRAS; Uncharacterized protein
STRINGXP_010487946.11e-164(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74430.11e-103myb domain protein 95