PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g012320.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 213aa    MW: 23794.9 Da    PI: 7.5604
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g012320.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.5e-08122169247
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 
                       +WT+eE + + +a + +  +   +W ++a++++ g+t  ++ + + k+
   Csa01g012320.1 122 SNWTKEENKMFERALAIYAEDspdRWFKVASMIP-GKTVLDVMNQYSKL 169
                      58*****************99*************.*********99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.827119172IPR017884SANT domain
SMARTSM007174.1E-9120172IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-4121168IPR009057Homeodomain-like
SuperFamilySSF466898.97E-12122176IPR009057Homeodomain-like
CDDcd001671.00E-8123169No hitNo description
PfamPF002495.2E-7123169IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
LSLSLSLCIR PFFIRPSQSI SLLTGSSHLN SHHSFVIRGE YLTRLCCFCL PSTTHFCRFS  60
LILSFSYSRG SVLYMLQISH PNQVLGSPQM ETLHPLSHLP ISDHRFVVEE IMSLHSSSSS  120
SSNWTKEENK MFERALAIYA EDSPDRWFKV ASMIPGKTVL DVMNQYSKLE EDVSDIEAGR  180
VPIPGYPAAS YSPLAFDPDT CRKRPNGARG SX*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-17114186173RADIALIS
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g012320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2546081e-154AC254608.1 Capsella rubella clone CAP16-D12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010418744.14e-86PREDICTED: protein RADIALIS-like 3
TrEMBLD7L9W12e-69D7L9W1_ARALL; Myb family transcription factor
STRINGXP_010418744.12e-85(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11280.23e-66MYB family protein