PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g012510.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 597aa    MW: 68475.1 Da    PI: 8.8982
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g012510.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.94.7e-08540583445
                      S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                      W+t  +  lv+a k ++++   +W+++a+ ++ g+t  qck ++ 
   Csa01g012510.1 540 WSTVQERALVQALKTFPKEtsqRWERVAAAVP-GKTMIQCKKKFA 583
                      ********************************.********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007614.27229133IPR001623DnaJ domain
SMARTSM002711.6E-657125IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1101.3E-1758144IPR001623DnaJ domain
SuperFamilySSF465655.36E-1658152IPR001623DnaJ domain
PfamPF002261.3E-1362130IPR001623DnaJ domain
CDDcd062571.67E-866122IPR001623DnaJ domain
PRINTSPR006255.3E-67489IPR001623DnaJ domain
PRINTSPR006255.3E-6105125IPR001623DnaJ domain
PROSITE patternPS006360110129IPR018253DnaJ domain, conserved site
PROSITE profilePS500906.272410465IPR017877Myb-like domain
SuperFamilySSF466891.79E-7411458IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.7E-5414457IPR009057Homeodomain-like
SMARTSM007175.1E-6414467IPR001005SANT/Myb domain
PfamPF002498.5E-6415457IPR001005SANT/Myb domain
CDDcd001670.00141417457No hitNo description
SMARTSM007172.1E-7536588IPR001005SANT/Myb domain
SuperFamilySSF466891.27E-8537585IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-4539584IPR009057Homeodomain-like
CDDcd001672.19E-5540586No hitNo description
PfamPF002495.6E-6540584IPR001005SANT/Myb domain
PROSITE profilePS500906.841540586IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MFCENNVLQN PLGFVDSLVL MLMLSRNQRG YSSLGVRLFA AXDETIQNSF FRICSSFNAL  60
TVKRPSEPEI RKSYREAALK HHPDKLATLL LLEETEEAKE AKKDEIESRF KAIQEAYEVL  120
MDSTRRRIFD STDEFDDEVP SDCLPQDFFK VFGPAFKRNA RWSVNQRIPD LGDENTPLKD  180
VDKFYNFWYA FKSWREFPDE EEHDLEQADS REERRWMEKE NAKKTVKARK EEHARIRTLV  240
DNAYRKDPRI VKRKEEEKAE KQQKKEAKLL AKKKQEEDAA IAAEEEKKRK EEEEKRAAES  300
AQQQKKNKER EKKLLRKERN RLRTLSAPLV AQRLLDISEE DIEKLCMSLN TEQLQNLCDR  360
MGNKEGLELA KVIKDGCDTS RNDEAESKEK ESKKTNGGTE PTTRVSQLDS STVKKQPWSK  420
EEIDMLRKGM VKYPKGTSRR WEVVSEYIGT GRSVEEILKA TKTVLLQKPD SAKAFDSFLE  480
KRKPSASIAS PLSTREELGE SLPTATTTTK ASPSKETVVA NSQSSDNNGE AGASSDTDGW  540
STVQERALVQ ALKTFPKETS QRWERVAAAV PGKTMIQCKK KFAELKEIIR NKKTGV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A2e-1414725020123Zuotin
5dje_B2e-1414725020123Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1271289KKKQEEDAAIAAEEEKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g012510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0081530.0AC008153.5 Arabidopsis thaliana chromosome 3 BAC F24K9 genomic sequence, complete sequence.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010418806.10.0PREDICTED: dnaJ homolog subfamily C member 2-like
TrEMBLA0A178VPF00.0A0A178VPF0_ARATH; Uncharacterized protein
STRINGXP_010418806.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23612755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.11e-156DnaJ domain ;Myb-like DNA-binding domain