PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g013800.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 598aa    MW: 65599.5 Da    PI: 8.0114
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g013800.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.81.4e-11177200326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     ++ C ++++t tCk+Gd+CkF H+
  Csa01g013800.1 177 EKDCTHYMQTRTCKFGDSCKFDHP 200
                     678********************8 PP
2zf-CCCH28.42.9e-09226252127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++ C+++ +t  Cky +rCkF+H++
  Csa01g013800.1 226 PGEPDCPYYIKTQRCKYASRCKFNHPR 252
                     5789*********************96 PP
3zf-CCCH36.86.6e-12271295327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C f+++tG Ck+G +CkF+H++
  Csa01g013800.1 271 EPMCTFYMKTGKCKFGLTCKFHHPK 295
                     689********************96 PP
4zf-CCCH37.92.9e-12341367127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++ C+f+++tG CkyG++C+++H++
  Csa01g013800.1 341 PGEADCPFYLKTGSCKYGATCRYNHPE 367
                     57899********************96 PP
5zf-CCCH406.6e-13422446226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C+++++tG+Ck+G+rC+F+H+
  Csa01g013800.1 422 GQSECDYYMKTGECKFGERCRFHHP 446
                     7899********************8 PP
6zf-CCCH35.61.5e-11496520226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C+++++tG+C +G+rC+F+H+
  Csa01g013800.1 496 GQSECDYYMKTGECEFGERCRFHHP 520
                     7899********************8 PP
7zf-CCCH41.22.7e-13552574527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                     +C+++++tGtCkyG++CkF H+p
  Csa01g013800.1 552 NCPYYMKTGTCKYGATCKFDHPP 574
                     6********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.432174202IPR000571Zinc finger, CCCH-type
SMARTSM003560.0041176201IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5176201IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-9177200IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4180199IPR000571Zinc finger, CCCH-type
SMARTSM003560.0014225252IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.357225253IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-5227252IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-5230254IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4231254IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4268295IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.3268296IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-6271296IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-5273294IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-9274295IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-7340367IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.554340368IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-10342367IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5344368IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4346367IPR000571Zinc finger, CCCH-type
SMARTSM003567.3E-6420447IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.047420448IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-7421451IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-10422446IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.1E-6426448IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-5494521IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.521494522IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6495524IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-9496520IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-5500521IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-6547574IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.389547575IPR000571Zinc finger, CCCH-type
PfamPF006428.9E-11552574IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5552574IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-5553572IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MAHRQLYSYA LHQPSHAAAA SAVSPAPPPQ PPITALSSLY GSSSADHYYP DTTFRFLARD  60
GSEALSNYNS GTLASSSAMY HHLPNTTASH LAYPQLLQHQ EASSWPPGVE VPGAASAVEP  120
LPPGVKRTSE ALYYPTLLGA HNTIGQTEAW YTTDYFTKRP KLESTSHLPV YPQRAGEKDC  180
THYMQTRTCK FGDSCKFDHP IWVPEGGIPD WKEAPVVPNE EYPERPGEPD CPYYIKTQRC  240
KYASRCKFNH PRAEAAASVE NQDVLPERPS EPMCTFYMKT GKCKFGLTCK FHHPKDIQLP  300
SSSQGNGSSE VLTSDPDATN NPHVTFTPAL YHNSKGLPVR PGEADCPFYL KTGSCKYGAT  360
CRYNHPERTA FIPQAAGINY SLLSSNAANL NLGMVTPATS LYQTLSQPTL GAVSATYPQR  420
PGQSECDYYM KTGECKFGER CRFHHPADRL NATAKQASQQ PNVKLSLAGY PRRERLTKLS  480
LLQLGAPSAT YPQRPGQSEC DYYMKTGECE FGERCRFHHP ADRLSATTKQ ASQPPNVKLS  540
LAGYPRREGA LNCPYYMKTG TCKYGATCKF DHPPPGEVMA KTTSEADAAG ATTDTTQ*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g013800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0243570.0AY024357.1 Arabidopsis thaliana floral homeotic protein HUA1 (HUA1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010499333.10.0PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X2
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLR0I1T40.0R0I1T4_9BRAS; Uncharacterized protein
STRINGXP_010499325.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97612836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0floral homeotic protein (HUA1)