PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa01g013860.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

G2-like

Protein Properties

Length: 232aa MW: 26571.2 Da PI: 7.74

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa01g013860.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.6	6.6e-34	23	77	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av++LGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl Csa01g013860.1 23 KPRLRWTAELHERFVDAVTHLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 77 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.53	20	80	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.1E-32	20	78	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.3E-17	22	78	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-24	23	78	IPR006447	Myb domain, plants
Pfam	PF00249	5.6E-8	25	75	IPR001005	SANT/Myb domain
Pfam	PF14379	2.0E-14	123	163	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MMQSREEMRD DSSSGLVLTT DPKPRLRWTA ELHERFVDAV THLGGPDKAT PKTIMRVMGV 60 KGLTLYHLKS HLQKFRLGKQ PHKEHNQNHS INIRDTNRAS MLDLRRNAVF TTSPLIIGRN 120 MNEMQMEVQR RIEEEVELER QVNQRIEAQG KYMDSMLEKA CETQEASLTK DYSTLFFDRT 180 NISALPIPWF EDHFPSSSSM DSTLMLPDIN SSFTLQDSRS SITKGRTVCL G*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-19	23	79	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-19	23	79	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-19	23	79	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-19	23	79	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-19	23	79	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-19	23	79	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-19	23	79	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-19	23	79	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-19	23	79	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-19	23	79	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-19	23	79	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-19	23	79	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa01g013860.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY070764	0.0	AY070764.1 Arabidopsis thaliana AT3g12730/MBK21_9 mRNA, complete cds.
GenBank	AY143916	0.0	AY143916.1 Arabidopsis thaliana At3g12730/MBK21_9 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010499421.1	1e-174	PREDICTED: myb family transcription factor PHL12-like isoform X2
Swissprot	Q8VYI2	1e-163	PHLC_ARATH; Myb family transcription factor PHL12
TrEMBL	A0A178V5I9	1e-160	A0A178V5I9_ARATH; Uncharacterized protein
STRING	XP_010499411.1	1e-171	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13745	17	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12730.1	1e-165	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]