 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Csa01g016250.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
| Family |
GRAS |
| Protein Properties |
Length: 508aa MW: 56800.8 Da PI: 5.1191 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa01g016250.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 262.2 | 1.8e-80 | 145 | 507 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl...fsevsPilk 92
++lL cA a++s++ +++q++L+ lselas++gd+++Rla + ++AL+++l++ s ++ ++ + + +++ e+ +++k+ f+evsP++
Csa01g016250.1 145 EQLLNPCALAITSRNSSRVQHYLCVLSELASSSGDANRRLADFGLRALQHHLSSsSLPSSSSPVVTFASA-----EVKMFQKTllkFYEVSPWFA 234
689**************************************************93444444444444433.....33333333446********* PP
GRAS 93 fshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg....skeeleetgerLakfAeelgvpfef 178
+ + +aN+a+l+ +++e + +Hi+D+++s+G+QWp+Ll+aL++R+ ++pp++Ri +v++ +++ ++ ++L fA++l++++++
Csa01g016250.1 235 LPNNMANSAVLQILAQEpidkKDLHILDIGVSHGMQWPTLLEALSCRSeGPPPHVRISVVSDLTADipfsVGPPAYSYDSQLLGFARSLKINLQI 329
****************99998899************************55667*********99999998889999******************* PP
GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
+v+ + +++ +++p+E+l+V+ +++lh+l s+++er+e L++++sl+Pk v+++e++ + s++F+++f+++ley ++++ds+++
Csa01g016250.1 330 SVI--D-----KFQLVDTSPHETLIVCAQFRLHHLK---YSIPEERSEALRALRSLRPKGVILCENNGEA-SGDFAAGFSRKLEYLWKFLDSTSS 413
*96..4.....4566699*****************8...88999999*********************98.899*******************99 PP
GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpL 367
++ +e+++ Er+l++ e+++v++++g++ e + kW er++eaGF + +++e+a + ak+llrk++ +++ r+e+ + + l+Wk++++
Csa01g016250.1 414 GF----KEENSEERKLIEGEATKVLMNAGEM----GEGKDKWYERMREAGFAAEAFGEDAIDGAKSLLRKYDkNWEIRMEDGDTFAGLTWKGEAV 500
97....8888899999**************9....99***********************************666666666666666******** PP
GRAS 368 vsvSaWr 374
++S W+
Csa01g016250.1 501 SFCSLWK 507
******8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0042446 | Biological Process | hormone biosynthetic process |
| GO:2000032 | Biological Process | regulation of secondary shoot formation |
| Sequence ? help Back to Top |
| Protein Sequence Length: 508 aa
Download sequence Send
to blast |
MSLEETEPPN QTLDHVLSWL EDSVSLSPLP GFDDSYLLHE FDGSQTWEWD QTQDPEHGFI 60
QSYSQDLSAY VGCEATNLEV VTEAPFINLD PLPELQQPNN QSRKRSSDKL IEAQHVKRSA 120
RSKKKSNKSS EKSCKDGNKE ERWAEQLLNP CALAITSRNS SRVQHYLCVL SELASSSGDA 180
NRRLADFGLR ALQHHLSSSS LPSSSSPVVT FASAEVKMFQ KTLLKFYEVS PWFALPNNMA 240
NSAVLQILAQ EPIDKKDLHI LDIGVSHGMQ WPTLLEALSC RSEGPPPHVR ISVVSDLTAD 300
IPFSVGPPAY SYDSQLLGFA RSLKINLQIS VIDKFQLVDT SPHETLIVCA QFRLHHLKYS 360
IPEERSEALR ALRSLRPKGV ILCENNGEAS GDFAAGFSRK LEYLWKFLDS TSSGFKEENS 420
EERKLIEGEA TKVLMNAGEM GEGKDKWYER MREAGFAAEA FGEDAIDGAK SLLRKYDKNW 480
EIRMEDGDTF AGLTWKGEAV SFCSLWK*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC237328 | 0.0 | AC237328.1 Arabidopsis lyrata clone JGIFAFI-41L7, complete sequence. |
