PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g016510.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 485aa    MW: 54409.2 Da    PI: 5.9397
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g016510.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS271.92.1e-831204842374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl...fsevsPilk 92 
                     ++lL  cA a++s++ +++q++L+ lselas++gd+++Rla + ++AL+++l++ s ++ ++ + + +++  +++   +   +   f+evsP++ 
  Csa01g016510.1 120 EQLLNPCALAITSRNSSRVQHYLCVLSELASSSGDANRRLAEFGLRALQHHLSSsSLPSSSSRVVAFAST--EVKMFQK---TllkFYEVSPWFA 209
                     689**************************************************94555555555555554..2333333...3345********* PP

            GRAS  93 fshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg....skeeleetgerLakfAeelgvpfef 178
                     + + +aN+aIl+ +++e    + +HiiD+++s+G+QWp+Ll+aL++R+ ++ p++Ri +v++ +++          ++ ++L  fA++l++++++
  Csa01g016510.1 210 LPNNMANSAILQILAQEpidkKDLHIIDIGVSHGMQWPTLLEALSCRSeGPHPHVRISVVSDLTADitfsVGPPAYSYDSQLLGFARSLKINLQI 304
                     ****************99998899************************55567*********99999998888999******************* PP

            GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsle 272
                     +v+        +++ ++++p+E+l+V+ +++lh+l     s+++er+e L++++sl+Pk v+++e++ +  +s++F+e+f+++ley+++++ds++
  Csa01g016510.1 305 SVV-------DKFQLIDTSPHETLIVCAQFRLHHLK---YSIPEERSEALRALRSLRPKGVILCENNGEGsTSGDFAEGFSRKLEYMWKFLDSTS 389
                     *96.......456888*******************8...88999999********************9998999********************9 PP

            GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrp 366
                     +++    +e+++ Er+l++ e+++v++++g++     e +ekW +r+++aGF + +++e+a + ak+llrk++ +++ r+e+ +  + l+Wk+++
  Csa01g016510.1 390 SGF----KEENSEERKLIEGEATKVLMNAGEM----DEGKEKWYQRMRKAGFAAEAFGEDAIDGAKSLLRKYDkNWEIRMEDGDTFAGLTWKGEA 476
                     997....8888899999**************9....999**********************************666666666666666******* PP

            GRAS 367 LvsvSaWr 374
                     + ++S W+
  Csa01g016510.1 477 VSFCSLWK 484
                     *******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.35293463IPR005202Transcription factor GRAS
PfamPF035147.1E-81120484IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MSLEETEPPN QTLDHVLSWL EDSVSLSPLP GFDDSYLLQD FDGSQTWEWD QTQDPEHGGP  60
PIDLYPSPVI QQPNNQSRKR SSDKLIEAQH VKRSARSKKK SNKSSEKSCK DGNKEERWAE  120
QLLNPCALAI TSRNSSRVQH YLCVLSELAS SSGDANRRLA EFGLRALQHH LSSSSLPSSS  180
SRVVAFASTE VKMFQKTLLK FYEVSPWFAL PNNMANSAIL QILAQEPIDK KDLHIIDIGV  240
SHGMQWPTLL EALSCRSEGP HPHVRISVVS DLTADITFSV GPPAYSYDSQ LLGFARSLKI  300
NLQISVVDKF QLIDTSPHET LIVCAQFRLH HLKYSIPEER SEALRALRSL RPKGVILCEN  360
NGEGSTSGDF AEGFSRKLEY MWKFLDSTSS GFKEENSEER KLIEGEATKV LMNAGEMDEG  420
KEKWYQRMRK AGFAAEAFGE DAIDGAKSLL RKYDKNWEIR MEDGDTFAGL TWKGEAVSFC  480
SLWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B2e-3811148479473Protein SHORT-ROOT
5b3h_B9e-3911148425419Protein SHORT-ROOT
5b3h_E9e-3911148425419Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g016510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2373280.0AC237328.1 Arabidopsis lyrata clone JGIFAFI-41L7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010465283.10.0PREDICTED: scarecrow-like protein 29
SwissprotQ9LRW30.0SCL29_ARATH; Scarecrow-like protein 29
TrEMBLD7L2900.0D7L290_ARALL; Scarecrow transcription factor family protein
STRINGXP_010465283.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107472834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.10.0GRAS family protein