PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g018100.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 345aa    MW: 38328.3 Da    PI: 8.6789
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g018100.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1738.7e-54171441128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeelvv+yLk+k+++ +l++  +i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+vl++
  Csa01g018100.1  17 LPPGFRFHPTDEELVVHYLKRKAASAPLPV-AIIAEVDLYKFDPWELPAKASFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLAS 110
                     79****************************.88***************999999***************************************99 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++++vg+kk Lvfy+g+ pkg+k+dW+mheyrl
  Csa01g018100.1 111 dGNQKVGVKKALVFYSGKPPKGVKSDWIMHEYRL 144
                     67788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-6512178IPR003441NAC domain
PROSITE profilePS5100562.08717178IPR003441NAC domain
PfamPF023656.6E-2818144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MESTDSSGGP PPPQPNLPPG FRFHPTDEEL VVHYLKRKAA SAPLPVAIIA EVDLYKFDPW  60
ELPAKASFGE QEWYFFSPRD RKYPNGARPN RAATSGYWKA TGTDKPVLAS DGNQKVGVKK  120
ALVFYSGKPP KGVKSDWIMH EYRLIENKLN NRPPGCDFGN KKNSLRLDDW VLCRIYKKNN  180
AGRHVDNDKD HDMIDYIFRK IPPSLSMAAA ATGLHHHHHN VSRSMNFFPG KFSGGGYGIY  240
SDGNTNLYEG GGMINNNMGT DSVPMMMMPN QKRALPVPYW PVAEEEQDAS PSKRFHGGGD  300
CSNMSSSMME ETPPMMQQQG GGVLGDGLFR TTPYQLPGLN WYPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-741118311170NO APICAL MERISTEM PROTEIN
1ut4_B1e-741118311170NO APICAL MERISTEM PROTEIN
1ut7_A1e-741118311170NO APICAL MERISTEM PROTEIN
1ut7_B1e-741118311170NO APICAL MERISTEM PROTEIN
3swm_A2e-741118314173NAC domain-containing protein 19
3swm_B2e-741118314173NAC domain-containing protein 19
3swm_C2e-741118314173NAC domain-containing protein 19
3swm_D2e-741118314173NAC domain-containing protein 19
3swp_A2e-741118314173NAC domain-containing protein 19
3swp_B2e-741118314173NAC domain-containing protein 19
3swp_C2e-741118314173NAC domain-containing protein 19
3swp_D2e-741118314173NAC domain-containing protein 19
4dul_A1e-741118311170NAC domain-containing protein 19
4dul_B1e-741118311170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g018100.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0490710.0AB049071.1 Arabidopsis thaliana AtNAC2 mRNA, complete cds.
GenBankBT0040790.0BT004079.1 Arabidopsis thaliana clone RAFL15-22-L08 (R20756) putative jasmonic acid regulatory protein (At3g15510) mRNA, complete cds.
GenBankBT0050440.0BT005044.1 Arabidopsis thaliana clone U20756 putative jasmonic acid regulatory protein (At3g15510) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010503061.10.0PREDICTED: NAC transcription factor 56
SwissprotQ9LD440.0NAC56_ARATH; NAC transcription factor 56
TrEMBLA0A178VP090.0A0A178VP09_ARATH; NARS1
STRINGXP_010503061.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19028276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.10.0NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]