PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g018980.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 272aa    MW: 30261.4 Da    PI: 5.423
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g018980.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-1792142155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     + y+GVr ++ +g+Wv+eIr p++   ++r++lg+f ta++Aa+a++ a++ ++g
  Csa01g018980.1  92 PVYRGVRMRS-WGKWVSEIRQPRK---KTRIWLGTFATADMAARAHDVAALTIKG 142
                     68*****998.**********843...6**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.6E-1292142IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-2093151IPR016177DNA-binding domain
SMARTSM003802.4E-3593156IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-3193151IPR001471AP2/ERF domain
PROSITE profilePS5103222.58993150IPR001471AP2/ERF domain
PRINTSPR003672.5E-1094105IPR001471AP2/ERF domain
CDDcd000181.23E-3194152No hitNo description
PRINTSPR003672.5E-10116132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MRCAVYKYQH VSHPHKQDEE VQVISLSLSF SQNKRVQKMS SLNSSSSPTS SSSDQSDATT  60
TTTSSTHLSE KNTRKRRRDT SSSTSSSSPK HPVYRGVRMR SWGKWVSEIR QPRKKTRIWL  120
GTFATADMAA RAHDVAALTI KGSSAVINFP ELASLFPRPV SSSPQDIQAA AAEAAAMVVE  180
GKTSETETET SSEAPPRPSE SSEEERLEEI VELPNIEEGR YDGSVTSRDD LAYSEPLDCW  240
VYPPVMDFYE EISEFNFVEL WSFSPHTELI N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1788150972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17377RKRRR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g018980.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV LIGHT. {ECO:0000269|PubMed:16307362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010504078.11e-168PREDICTED: ethylene-responsive transcription factor ERF036-like
SwissprotQ9LU181e-98ERF36_ARATH; Ethylene-responsive transcription factor ERF036
TrEMBLV4LCY01e-103V4LCY0_EUTSA; Uncharacterized protein
STRINGXP_010504078.11e-168(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150411618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16280.12e-72ERF family protein