PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa01g024520.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

MYB_related

Protein Properties

Length: 1526aa MW: 172380 Da PI: 8.855

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa01g024520.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.6	1.4e-08	46	81	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++eE e+++++ +++G++ Wk++a+ + R+++++ Csa01g024520.1 46 QWSKEELERFYEGYRKFGKE-WKKVAAFVH-SRSAEMV 81 6*****************.******9.9999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.48E-10	42	92	IPR009057	Homeodomain-like
SMART	SM00717	2.0E-4	43	91	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.6E-5	46	82	IPR009057	Homeodomain-like
Pfam	PF00249	2.4E-7	46	81	IPR001005	SANT/Myb domain
CDD	cd00167	6.58E-5	47	89	No hit	No description
SMART	SM01135	4.1E-7	604	715	IPR033471	DIRP domain
Pfam	PF06584	8.7E-8	604	644	IPR033471	DIRP domain
SMART	SM01135	3.5E-59	754	855	IPR033471	DIRP domain
Pfam	PF06584	4.7E-30	754	854	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1526 aa Download sequence Send to blast
MAPSRSKKSK YKKTPRGKAV SPQKEEENMS KTKQRKRKLS DMLGPQWSKE ELERFYEGYR 60 KFGKEWKKVA AFVHSRSAEM VEALYTMNKA YLSLPEGTAS VVGLNAMMTD HYSVLHGGSD 120 SEQENNEGIE TPRSASKRSR VKSSDHPSVG LEGLSDRLQF RSSSGFLPSL KKRRTENVPR 180 AVGKRTPRIP IPYTIEKDTR ERYLSPVKRG LSQKGDDTDD DMEHEIAVAL AEASRRGGST 240 NNSHTPNKKA KMYLSDKKGE RMRADIDLAI AKLRAGDMED VRCEPSLGST EADNADYSGG 300 RNDLTHGEGT SAMEVQQKGR KYYRRRLGIK KEDAKEACSG TDEAPSLGAL DEKFEPERDE 360 KSLKLTYKFS RRKSKKSLFT ADEDTACDAL QTLADLSLMM PETTTDTESS VQVEENRAEK 420 AFVSNLKGTD PASMSKSSSL RNSKQRRLGS NDLCNTETER KSPSSSLIRK RRQITSPTKV 480 TKDELAASSQ VIEPCNNKGI GEGNKPVGRS KRSASIRNSH EKKPVKSQDR TPSSNNIVEE 540 DELAPSNAVI KKQVNLLTKV RSRRKIVPEK PLSMGDWKNS EILEKFSHCI SSFRARRWCL 600 FEWFYSAIDY PWFARQEFVE YLDHVGLGHV PRLTRVEWGV IRRLSLTKGI GEGNKPVGRS 660 KRSASIRNSH EKKPVKSQDR TPSSNNIVEE DELAPSNAVI KKQVNLLTKV RSRRKIVPEK 720 PLSMGDWKNS EILEKFSHCI SSFRARRWCL FEWFYSAIDY PWFARQEFVE YLDHVGLGHV 780 PRLTRVEWGV IRSSLGKPRR FSQQFLKEEK EKLYLYRDSV RKHYDELNKG MREGLPMDLA 840 RPLNVSQRVI SVHPKSREIH DGSVLTIDHC RYRIQFDNPE LGVEFVKDTE CMPLNPLENM 900 PASLAKHYAF SNYNIQNSSE EKMQERVKES TPEGYLKLSC ETGHLLNSPN FNISNSLKQE 960 KVDISSSNPQ AQDGVDEALD LQSLNPQPST IGHIQAREAD VKALSELTRA LDKKGMREGL 1020 PMDLARPLNV SQRVISVHPK SREIHDGSVL TIDHCRYRIQ FDNPELGVEF VKDTECMPLN 1080 PLENMPASLA KHYAFSNYNI QNSSEEKMQE RVKESTPEGY LKLSCETGHL LNSPNFNISN 1140 SLKQEKDTEC MPLNPLENMP ASLAKHYAFS NYNIQNSSEE KMQERVKEST PEGYLKLSCE 1200 TGHLLNSPNF NISNSLKQEK VDISSSNPQA QDGVDEALDL QSLNPQPSTI GHIQAREADV 1260 KALSELTRAL DKKELVLREL KCMNNEVVES QKDGHSAPKD SESFKKQYAA VSLALLGLRQ 1320 RNTYQENVPY ASIRHMSKSG EPDDQLTYVD SYASETNGFH VSEIVESSRI KARKMVYRAV 1380 QALASLRKDK NDVVNMEEAI DFVNNQLSID QTEGPSVHQR QGAQDQRLPS TPNPRSSTPA 1440 NDSHQNQPDQ NDLQIPSELV SRCMATLLMI QKCTERQFPP SEVAQVLDSA VASLQPCCSQ 1500 NLPIYTEIQK CMGIIRNQIL ALVPS*

Sequence ? help Back to Top

Protein Sequence Length: 1526 aa Download sequence Send to blast

MAPSRSKKSK YKKTPRGKAV SPQKEEENMS KTKQRKRKLS DMLGPQWSKE ELERFYEGYR  60
KFGKEWKKVA AFVHSRSAEM VEALYTMNKA YLSLPEGTAS VVGLNAMMTD HYSVLHGGSD  120
SEQENNEGIE TPRSASKRSR VKSSDHPSVG LEGLSDRLQF RSSSGFLPSL KKRRTENVPR  180
AVGKRTPRIP IPYTIEKDTR ERYLSPVKRG LSQKGDDTDD DMEHEIAVAL AEASRRGGST  240
NNSHTPNKKA KMYLSDKKGE RMRADIDLAI AKLRAGDMED VRCEPSLGST EADNADYSGG  300
RNDLTHGEGT SAMEVQQKGR KYYRRRLGIK KEDAKEACSG TDEAPSLGAL DEKFEPERDE  360
KSLKLTYKFS RRKSKKSLFT ADEDTACDAL QTLADLSLMM PETTTDTESS VQVEENRAEK  420
AFVSNLKGTD PASMSKSSSL RNSKQRRLGS NDLCNTETER KSPSSSLIRK RRQITSPTKV  480
TKDELAASSQ VIEPCNNKGI GEGNKPVGRS KRSASIRNSH EKKPVKSQDR TPSSNNIVEE  540
DELAPSNAVI KKQVNLLTKV RSRRKIVPEK PLSMGDWKNS EILEKFSHCI SSFRARRWCL  600
FEWFYSAIDY PWFARQEFVE YLDHVGLGHV PRLTRVEWGV IRRLSLTKGI GEGNKPVGRS  660
KRSASIRNSH EKKPVKSQDR TPSSNNIVEE DELAPSNAVI KKQVNLLTKV RSRRKIVPEK  720
PLSMGDWKNS EILEKFSHCI SSFRARRWCL FEWFYSAIDY PWFARQEFVE YLDHVGLGHV  780
PRLTRVEWGV IRSSLGKPRR FSQQFLKEEK EKLYLYRDSV RKHYDELNKG MREGLPMDLA  840
RPLNVSQRVI SVHPKSREIH DGSVLTIDHC RYRIQFDNPE LGVEFVKDTE CMPLNPLENM  900
PASLAKHYAF SNYNIQNSSE EKMQERVKES TPEGYLKLSC ETGHLLNSPN FNISNSLKQE  960
KVDISSSNPQ AQDGVDEALD LQSLNPQPST IGHIQAREAD VKALSELTRA LDKKGMREGL  1020
PMDLARPLNV SQRVISVHPK SREIHDGSVL TIDHCRYRIQ FDNPELGVEF VKDTECMPLN  1080
PLENMPASLA KHYAFSNYNI QNSSEEKMQE RVKESTPEGY LKLSCETGHL LNSPNFNISN  1140
SLKQEKDTEC MPLNPLENMP ASLAKHYAFS NYNIQNSSEE KMQERVKEST PEGYLKLSCE  1200
TGHLLNSPNF NISNSLKQEK VDISSSNPQA QDGVDEALDL QSLNPQPSTI GHIQAREADV  1260
KALSELTRAL DKKELVLREL KCMNNEVVES QKDGHSAPKD SESFKKQYAA VSLALLGLRQ  1320
RNTYQENVPY ASIRHMSKSG EPDDQLTYVD SYASETNGFH VSEIVESSRI KARKMVYRAV  1380
QALASLRKDK NDVVNMEEAI DFVNNQLSID QTEGPSVHQR QGAQDQRLPS TPNPRSSTPA  1440
NDSHQNQPDQ NDLQIPSELV SRCMATLLMI QKCTERQFPP SEVAQVLDSA VASLQPCCSQ  1500
NLPIYTEIQK CMGIIRNQIL ALVPS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa01g024520.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ583497	0.0	AJ583497.1 Arabidopsis thaliana mRNA for always early 3 protein (Ataly3 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019082723.1	0.0	PREDICTED: protein ALWAYS EARLY 3-like
Swissprot	Q6A332	0.0	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	R0HWF7	0.0	R0HWF7_9BRAS; Uncharacterized protein
STRING	XP_010420581.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12714	24	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]