PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g024930.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family LBD
Protein Properties Length: 126aa    MW: 14544.2 Da    PI: 8.9812
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g024930.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26080.92.1e-25131131100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +Ca C + +++C+++C +  yfp e++ +++n+h+lFG   ++k+++ +p++e + +++ss++ e++a+ + P +G +++i+kl++++ q k  l
  Csa01g024930.1  13 PCALCTTTNKTCSQNCEFTLYFPVEKKLEYKNAHELFGIPSIMKMMRFAPTTEeKCMLASSILTEGKAWKDYPAKGGFETIRKLKWEILQRKLYL 107
                     7************************************************87775999************************************** PP

          DUF260  95 allkee 100
                     ++lke+
  Csa01g024930.1 108 NKLKEK 113
                     999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.12612114IPR004883Lateral organ boundaries, LOB
PfamPF031958.2E-2113111IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MDVQINNVVI REPCALCTTT NKTCSQNCEF TLYFPVEKKL EYKNAHELFG IPSIMKMMRF  60
APTTEEKCML ASSILTEGKA WKDYPAKGGF ETIRKLKWEI LQRKLYLNKL KEKMKVVEEE  120
TKLGL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g024930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010510582.11e-82PREDICTED: LOB domain-containing protein 9-like
SwissprotO821988e-42LBD9_ARATH; LOB domain-containing protein 9
TrEMBLR0GAA12e-45R0GAA1_9BRAS; Uncharacterized protein
STRINGXP_010420726.19e-86(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122821432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19820.16e-44LOB domain-containing protein 9