PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g025010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 437aa    MW: 50543 Da    PI: 9.1896
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g025010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.33.1e-09832126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    ykt+lC+ f +tG C++ ++C+FaHg
  Csa01g025010.1  8 YKTKLCNLFKKTGNCSR-PNCSFAHG 32
                    9****************.*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.8E-12539IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-6737IPR000571Zinc finger, CCCH-type
SMARTSM003560.0013733IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.727734IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-7832IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MMSGSSMYKT KLCNLFKKTG NCSRPNCSFA HGTVELRRPG DSSFPGRRHN MDSDLRDRLG  60
RQFSPERRPS LDRSGRRLQR FSGHENARPF EFRRDKDYRE NHRFDERRDY AGGLKVGNRI  120
EGRAEDGRSK FQGYNNVEDG RNKFQGYSNV LEEQLKDVEM DVKTLTDDKL RLEASVERKA  180
HEVDILTSRI EELETQLDRE KEECRRITSS TKKFVKEYNR FLRAQDDLKR SEARLQKLGN  240
QLSTYLAESE GINRDVNVDI VSDEENNGRN LRTVCDPQNE LQNMPRKKRY VDQYTTKETV  300
EDGFIGRGEE EKMEKEKEKK RPSRWNMGSS KSYSKEESGA WNDEDTINKS SSKEDNWKRR  360
RFSIGTSSTD KVISSTSMAA QAFDDVAEFE EDNPEAAKSS PLISLPPPPP FRETHVQVNV  420
SRFSKTYARK LTSTGI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g025010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0598990.0AY059899.1 Arabidopsis thaliana Unknown protein (At3g21810; MSD21.12) mRNA, complete cds.
GenBankAY1287910.0AY128791.1 Arabidopsis thaliana unknown protein (At3g21810) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010510662.10.0PREDICTED: zinc finger CCCH domain-containing protein 40-like isoform X1
RefseqXP_010510671.10.0PREDICTED: zinc finger CCCH domain-containing protein 40-like isoform X1
SwissprotQ93XW70.0C3H40_ARATH; Zinc finger CCCH domain-containing protein 40
TrEMBLR0HR330.0R0HR33_9BRAS; Uncharacterized protein
STRINGXP_010510662.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM100692127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.10.0C3H family protein