PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g027650.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 158aa    MW: 17200.4 Da    PI: 6.7954
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g027650.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.000252547123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C++C++ F+++  L  H + H
  Csa01g027650.1 25 YECNICKRGFTNPQALGGHNNIH 47
                    99************998887777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.99E-62251No hitNo description
Gene3DG3DSA:3.30.160.604.1E-42449IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.8032552IPR007087Zinc finger, C2H2
PROSITE patternPS0002802747IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MNNRGKQNDS GSGSGSGSGD NRRTYECNIC KRGFTNPQAL GGHNNIHSRR ERNLSSFSPS  60
NSFPFSLPLL SQSPSSSTNP NDNNNPSHIF RPSIHTTTKG GGRFAQGESH GLDLSLGLGY  120
MMNEDDDTHR SPPETEGSEP QDDDLDLDLR LGRHRHH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g027650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0256083e-57AB025608.1 Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K14B15.
GenBankBT0119803e-57BT011980.1 Arabidopsis thaliana At3g23140 mRNA sequence.
GenBankBT0313823e-57BT031382.1 Arabidopsis thaliana unknown protein (At3g23140) mRNA, complete cds.
GenBankCP0026863e-57CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010490064.15e-52PREDICTED: zinc finger protein JAGGED-like
TrEMBLR0GBA22e-36R0GBA2_9BRAS; Uncharacterized protein
STRINGXP_010490064.12e-51(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.12e-09C2H2 family protein