PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa01g027740.2

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 316aa MW: 34649.8 Da PI: 5.2848

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa01g027740.2	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.2	9.2e-11	162	209	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RR+++N++f L ++l + + +K +K++iL A++ +++L Csa01g027740.2 162 TKACREKLRREKLNDRFMDLSSVLEPG---RTPKTDKVAILDDAIRVVNQL 209 6789********************8...8**************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.90E-9	149	210	No hit	No description
SuperFamily	SSF47459	6.02E-13	149	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.154	158	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.9E-8	162	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-10	164	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.9E-12	164	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MTSVCSNGVE DPYGFIQTNE DGTNIFQDFG SSGVNLQQPQ QQGLQFDSFS GNLEQVCSFR 60 GENEGVVYSS SIGSPQLDLG ASFSGVLQQK TQQVCGFRGG NDDSSAAAPH LLQQGPGQVV 120 CSDVVEINSS SSVGGVKEEL EHVEEECSKK RRRTGSCNKP GTKACREKLR REKLNDRFMD 180 LSSVLEPGRT PKTDKVAILD DAIRVVNQLR GEAHELKETN QKLLEEIKNL KAEKNELREE 240 KLVLKADKEK IEQELKSMAV PPSGFMPPQH PAAFHPNKMA VFPSYGYYPN MSMWPFVNPA 300 GRDSSQDVKD HAPVA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa01g027740.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010512182.1	0.0	PREDICTED: transcription factor bHLH34-like
Swissprot	Q9LTC7	1e-166	BH034_ARATH; Transcription factor bHLH34
TrEMBL	R0HMW7	1e-173	R0HMW7_9BRAS; Uncharacterized protein
STRING	XP_010512182.1	0.0	(Camelina sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23210.1	1e-158	bHLH family protein

Publications ? help Back to Top
Li X,Zhang H,Ai Q,Liang G,Yu D Two bHLH Transcription Factors, bHLH34 and bHLH104, Regulate Iron Homeostasis in Arabidopsis thaliana. Plant Physiol., 2016. 170(4): p. 2478-93 [PMID:26921305] Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]