PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g027750.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 133aa    MW: 14605 Da    PI: 6.264
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g027750.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.52.9e-171362254
             AP2  2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkkle 54
                    +y+GVr ++ +g+++AeIrd      ++ +r+slg+f ta++Aa+a+++a+ +++
  Csa01g027750.1 13 KYRGVRKRP-WGKYAAEIRD----SaRHgARVSLGTFNTADDAARAYDRAAFAMR 62
                    8********.**********....33236**********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.05E-201373IPR016177DNA-binding domain
PfamPF008471.6E-121362IPR001471AP2/ERF domain
PROSITE profilePS5103221.1531371IPR001471AP2/ERF domain
SMARTSM003808.7E-311377IPR001471AP2/ERF domain
CDDcd000181.31E-141372No hitNo description
Gene3DG3DSA:3.30.730.103.3E-281373IPR001471AP2/ERF domain
PRINTSPR003671.9E-111425IPR001471AP2/ERF domain
PRINTSPR003671.9E-115373IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MERRESSNTN EVKYRGVRKR PWGKYAAEIR DSARHGARVS LGTFNTADDA ARAYDRAAFA  60
MRCQRAVLNF PHEYPMMGNS PSGGHGNVVA SSSSEYKGGG GGNGKEVIEF EYLDDTILEE  120
LLDYGENYNQ GT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-341311714114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g027750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010421448.11e-94PREDICTED: ethylene-responsive transcription factor ERF095-like
SwissprotQ9LTC65e-43ERF95_ARATH; Ethylene-responsive transcription factor ERF095
TrEMBLR0HPH44e-60R0HPH4_9BRAS; Uncharacterized protein
STRINGXP_010421448.14e-94(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.15e-41ERF family protein
Publications ? help Back to Top
  1. Quan R, et al.
    EIN3 and SOS2 synergistically modulate plant salt tolerance.
    Sci Rep, 2017. 7: p. 44637
    [PMID:28300216]