PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa01g028330.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

M-type_MADS

Protein Properties

Length: 254aa MW: 29188.2 Da PI: 9.0375

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa01g028330.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	70.8	1.2e-22	14	62	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+i+n+sn qvtfskRr g++KKA+EL++LC+ae+++i+fs+ gk + + Csa01g028330.1 14 KKIKNESNLQVTFSKRRFGLFKKASELCTLCGAEILMIVFSPGGKAFSF 62 68******************************************97766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	25.063	6	66	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.2E-34	6	65	IPR002100	Transcription factor, MADS-box
CDD	cd00265	8.63E-39	7	83	No hit	No description
SuperFamily	SSF55455	3.53E-29	7	95	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.4E-20	8	28	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.4E-24	15	62	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.4E-20	28	43	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.4E-20	43	64	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MVRSNKGRQK IEMKKIKNES NLQVTFSKRR FGLFKKASEL CTLCGAEILM IVFSPGGKAF 60 SFGHPGVKEL IHRFLNVNHN SLIPHQPNYN QQLAESCLDR NIQYLNEMLT QVLARQEKAK 120 HNRMALDMVR QSREERGKSW YEKDVKELDL NETDNLICAL QDVKKKVVSE MSDYPQLNVS 180 HQSYMGETFV FGGGRNVDVG GIDLFDQRVN TFSYNPVMDF PYQTPFFGYN NDGVIVPGYN 240 MNYMSSHNFN GRY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3kov_A	2e-16	7	96	1	86	Myocyte-specific enhancer factor 2A
3kov_B	2e-16	7	96	1	86	Myocyte-specific enhancer factor 2A
3kov_I	2e-16	7	96	1	86	Myocyte-specific enhancer factor 2A
3kov_J	2e-16	7	96	1	86	Myocyte-specific enhancer factor 2A
3p57_A	2e-16	7	96	1	86	Myocyte-specific enhancer factor 2A
3p57_B	2e-16	7	96	1	86	Myocyte-specific enhancer factor 2A
3p57_C	2e-16	7	96	1	86	Myocyte-specific enhancer factor 2A
3p57_D	2e-16	7	96	1	86	Myocyte-specific enhancer factor 2A
3p57_I	2e-16	7	96	1	86	Myocyte-specific enhancer factor 2A
3p57_J	2e-16	7	96	1	86	Myocyte-specific enhancer factor 2A
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa01g028330.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010421667.1	0.0	PREDICTED: agamous-like MADS-box protein AGL62
TrEMBL	A0A178UZM5	1e-113	A0A178UZM5_ARATH; Uncharacterized protein
TrEMBL	A0MFC4	1e-113	A0MFC4_ARATH; Uncharacterized protein (Fragment)
TrEMBL	O23222	1e-113	O23222_ARATH; MADS-box protein
STRING	XP_010421667.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14294	10	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36590.1	1e-118	M-type_MADS family protein