PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g030000.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GATA
Protein Properties Length: 332aa    MW: 37312.5 Da    PI: 8.6444
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g030000.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.71.8e-19254288135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg+ kTp+WR gp g+ktLCnaCG++y++ +l
  Csa01g030000.1 254 CQHCGAEKTPQWRAGPLGPKTLCNACGVRYKSGRL 288
                     *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.0E-15248298IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.873251284IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.5E-15251311No hitNo description
Gene3DG3DSA:3.30.50.101.2E-14252286IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.47E-14253300No hitNo description
PfamPF003205.2E-17254288IPR000679Zinc finger, GATA-type
PROSITE patternPS003440254279IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
LPHFQPILLI IHLIILLFCQ IEKEKEYPKR RCVREREREI INFSASFSSI IFFLSLQTKN  60
KKKENTSETM EMESFMDDLL NFSVPEEEEE DETQPSRNIT RRKTGIRQTD SLGLLNHGDH  120
GVVEEEDLEW ISNKDAFPVI ETFVGVLPLS EHFGVTSPER EAIEGKQLSP VSVLETSSNS  180
STTTSNSSGG STAMATTTSM LMSCCVSFKA PAKARSKRRR TGRRDLRVLW TGNEIQKMKK  240
TMSASAAVII GRKCQHCGAE KTPQWRAGPL GPKTLCNACG VRYKSGRLVP EYRPANSPTF  300
TVELHSNSHR KIVEMRKQYQ SGDGDHRKDC G*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g030000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankY136480.0Y13648.1 Arabidopsis thaliana mRNA for GATA transcription factor 1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010513260.10.0PREDICTED: GATA transcription factor 1-like isoform X1
SwissprotQ8LAU91e-123GATA1_ARATH; GATA transcription factor 1
TrEMBLD7L4A31e-121D7L4A3_ARALL; Uncharacterized protein
TrEMBLR0HN961e-121R0HN96_9BRAS; Uncharacterized protein
STRINGXP_010513260.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM129872430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.11e-113GATA transcription factor 1