PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g036710.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 315aa    MW: 35181.7 Da    PI: 5.2174
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g036710.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS169.92e-52451874149
            GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                     +L++cA+avs+++l la++++ +l+ ++s +g p+qRl ay++e+L arla s+s++yk+l+++e +   s e l+++ +++ev+P++kf+++ a
  Csa01g036710.1  45 VLVACAKAVSENNLLLARWCMGELRGMVSISGAPIQRLGAYMLEGLVARLAASGSSIYKSLQSREPE---SYEFLSYVYVLHEVCPYFKFGYMSA 136
                     79****************************************************************9...9************************ PP

            GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgs 149
                     N aI ea++ eer+HiiDf+i+qG QW++L+qa+a+Rp+g+p++RiTg+g+
  Csa01g036710.1 137 NGAIAEAMKDEERIHIIDFQIGQGSQWISLIQAFAARPGGAPNIRITGIGR 187
                     *************************************************98 PP
2GRAS74.71.7e-23190264188262
            GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                     +l+ + L   +gEal Vn++++lh+l+desvs+e++rd++L++vkslsPkvv++veqe+++n+++Fl rf+e+l+
  Csa01g036710.1 190 KLKWQILMSGEGEALGVNFAYMLHHLPDESVSMENHRDRLLRMVKSLSPKVVTLVEQECNTNTSPFLPRFFETLS 264
                     56777888889*************************************************************996 PP
3GRAS39.11.1e-12261314320374
            GRAS 320 eeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     e+  F+p+pls+ + +++++llr ++ +gy +ee++g+l+lgW+dr Lvs +aW+
  Csa01g036710.1 261 ETLSFEPYPLSSIISATIRALLRDYS-NGYGIEERDGALYLGWMDRILVSSCAWK 314
                     5678*********************9.9**************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098526.8316314IPR005202Transcription factor GRAS
PfamPF035147.0E-5045187IPR005202Transcription factor GRAS
PfamPF035145.8E-21190264IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MLQPLPEIAE SFNDAICHEL SMWPEDANDL LLIVEAISRG DLKWVLVACA KAVSENNLLL  60
ARWCMGELRG MVSISGAPIQ RLGAYMLEGL VARLAASGSS IYKSLQSREP ESYEFLSYVY  120
VLHEVCPYFK FGYMSANGAI AEAMKDEERI HIIDFQIGQG SQWISLIQAF AARPGGAPNI  180
RITGIGRVMK LKWQILMSGE GEALGVNFAY MLHHLPDESV SMENHRDRLL RMVKSLSPKV  240
VTLVEQECNT NTSPFLPRFF ETLSFEPYPL SSIISATIRA LLRDYSNGYG IEERDGALYL  300
GWMDRILVSS CAWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-294926526269Protein SCARECROW
5b3h_A3e-294926525268Protein SCARECROW
5b3h_D3e-294926525268Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g036710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0069550.0AC006955.6 Arabidopsis thaliana chromosome 2 clone F28I8 map RNS1, complete sequence.
GenBankAC0072110.0AC007211.6 Arabidopsis thaliana chromosome 2 BAC F1O13 genomic sequence, complete sequence.
GenBankAF2107320.0AF210732.1 Arabidopsis thaliana scarecrow-like 21 (SCL21) mRNA, complete cds.
GenBankAK1752100.0AK175210.1 Arabidopsis thaliana mRNA for putative SCARECROW gene regulator, complete cds, clone: RAFL21-63-H23.
GenBankBT0264550.0BT026455.1 Arabidopsis thaliana At2g04890 mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010467047.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ9S7H51e-171SCL21_ARATH; Scarecrow-like protein 21
TrEMBLV4MX301e-179V4MX30_EUTSA; Uncharacterized protein
STRINGXP_010467047.10.0(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04890.11e-173SCARECROW-like 21
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]