PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g038320.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRF
Protein Properties Length: 254aa    MW: 29113.8 Da    PI: 9.0266
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g038320.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC75.46e-2484126143
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrksk 43 
                     daepgrCrRtDGKkWRCs+++ +++k+CErH+hrg++rs+++k
  Csa01g038320.1  84 DAEPGRCRRTDGKKWRCSKEAFPDSKYCERHMHRGKNRSSSRK 126
                     79*************************************9987 PP
2QLQ59.78.4e-21641237
             QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                    +FT +Q+++L++Q+l++KyLaan+PvPp+Ll+ i++
  Csa01g038320.1  6 PFTKSQWEELENQALVFKYLAANVPVPPHLLFLIKR 41
                    8******************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.3E-14541IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.9E-15639IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.663641IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.84484129IPR014977WRC domain
PfamPF088791.3E-1985126IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MTTRIPFTKS QWEELENQAL VFKYLAANVP VPPHLLFLIK RPFLFSSSSS SSSSSPSPSS  60
FFSPTLSPHF GWNVYEMGMG RKIDAEPGRC RRTDGKKWRC SKEAFPDSKY CERHMHRGKN  120
RSSSRKPLPL TPQLTPNLFL ESSLSSSRVS RRRRSGYMDD FFSIEPSGSI KSCSGSAMED  180
DEGSCREKQP DRHCFILGTD LRTRERPLML DEEKLKQRGD DDEDEEEQRS KRLYRFLDEW  240
PSSKSSVSTS LFI*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g038320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010412907.10.0PREDICTED: growth-regulating factor 6-like
SwissprotQ9ZQ121e-127GRF6_ARATH; Growth-regulating factor 6
TrEMBLA0A178VV281e-125A0A178VV28_ARATH; GRF6
TrEMBLA0A178VWJ61e-125A0A178VWJ6_ARATH; GRF6
TrEMBLA0A1P8B2591e-125A0A1P8B259_ARATH; Growth-regulating factor 6
STRINGXP_010412907.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141011821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G06200.11e-107growth-regulating factor 6
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]
  2. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]