PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g039980.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 66aa    MW: 7735.77 Da    PI: 8.4878
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g039980.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.48e-063756525
                    --SGGGGTS--TTTTT-SS-S CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaH 25
                    +C+ff r G+C +G+ C++ H
  Csa01g039980.1 37 ICSFFIR-GECTRGAECPYRH 56
                    6**9999.**********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF161311.5E-83063IPR032297Torus domain
PROSITE profilePS5010314.223259IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-63258IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-73457IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-43660IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 66 aa     Download sequence    Send to blast
MIERLDYESS FGKIRSNDTI RMLQRTTPYY KRNRAHICSF FIRGECTRGA ECPYRHEMPE  60
TGDLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_P6e-171163137190Pre-mRNA-splicing factor RBM22
5xjc_O6e-171163137190Pre-mRNA-splicing factor RBM22
5yzg_O6e-171163137190Pre-mRNA-splicing factor RBM22
5z56_O6e-171163137190Pre-mRNA-splicing factor RBM22
5z57_O6e-171163137190Pre-mRNA-splicing factor RBM22
6ff4_P6e-171163137190Pre-mRNA-splicing factor RBM22
6ff7_P6e-171163137190Pre-mRNA-splicing factor RBM22
6icz_O6e-171163137190Pre-mRNA-splicing factor RBM22
6id0_O6e-171163137190Pre-mRNA-splicing factor RBM22
6id1_O6e-171163137190Pre-mRNA-splicing factor RBM22
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g039980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0045612e-68AC004561.3 Arabidopsis thaliana chromosome 2 clone F16P2 map ve014, complete sequence.
GenBankAF4283542e-68AF428354.1 Arabidopsis thaliana At2g29580/F16P2.4 mRNA, complete cds.
GenBankBT0026212e-68BT002621.1 Arabidopsis thaliana At2g29580/F16P2.4 gene, complete cds.
GenBankCP0026852e-68CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410015.12e-35zinc finger CCCH domain-containing protein 25
SwissprotQ9ZW361e-35C3H25_ARATH; Zinc finger CCCH domain-containing protein 25
TrEMBLA0A1J3E5695e-34A0A1J3E569_NOCCA; Zinc finger CCCH domain-containing protein 25 (Fragment)
TrEMBLV4MG006e-34V4MG00_EUTSA; Uncharacterized protein
STRINGBostr.27991s0221.1.p7e-35(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM347933