PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g041250.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family SRS
Protein Properties Length: 211aa    MW: 23373.7 Da    PI: 7.038
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g041250.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702104.12.4e-3261123264
          DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaa 64 
                     rs t+sCqdCGnqakk+C+h RCRtCCks+g+dC thv+stW+p+akrrerqqq ++++s+  
  Csa01g041250.1  61 RSLTISCQDCGNQAKKGCTHGRCRTCCKSHGLDCPTHVRSTWIPIAKRRERQQQIQTPTSNPI 123
                     57789**************************************************99988765 PP
2DUF70279.87.4e-2513119590154
          DUF702  90 klssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                     +++++ +++e+  +++P+ev s+a+frcvr+s+ ddg+ e+aYqt+v i+Gh fkGiLy+qG+++
  Csa01g041250.1 131 NIPNTLNSSEMGDATFPDEVTSDALFRCVRMSGTDDGDCEYAYQTTVGIAGHQFKGILYNQGPDK 195
                     677888888999999************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051423.0E-5064194IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.5E-2666108IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016246.4E-27146193IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MAGIGSSRNN EEDNQQKANW VWYRNTNNPS TSHHTNQIWQ QPSLDLYPGQ INVCDLTTSS  60
RSLTISCQDC GNQAKKGCTH GRCRTCCKSH GLDCPTHVRS TWIPIAKRRE RQQQIQTPTS  120
NPITGGDRVE NIPNTLNSSE MGDATFPDEV TSDALFRCVR MSGTDDGDCE YAYQTTVGIA  180
GHQFKGILYN QGPDKTITPG TQFYENPPRS *
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g041250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0072121e-126AC007212.7 Arabidopsis thaliana chromosome 2 clone F8D23 map PhyB, complete sequence.
GenBankCP0026851e-126CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010413933.21e-158PREDICTED: protein SHI RELATED SEQUENCE 4-like
SwissprotQ9SI191e-121SRS4_ARATH; Protein SHI RELATED SEQUENCE 4
TrEMBLA0A178VX851e-121A0A178VX85_ARATH; SRS4
STRINGXP_010413933.11e-157(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151171519
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18120.11e-118SHI-related sequence 4