PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa01g041280.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bZIP

Protein Properties

Length: 215aa MW: 23825.9 Da PI: 8.4555

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa01g041280.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	38	3.6e-12	76	132	5	61
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 ++ +r+ +NRe+ArrsR RK++ ++ L+ + +L++ N++ + l ++++ k ++ Csa01g041280.1 76 RKRKRMLSNRESARRSRMRKQKHVDDLTAQINQLSNDNRQILNSLTVTSQLYMKIQA 132 57899*********************************8877777666666666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.7E-16	72	136	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	9.2E-10	73	120	No hit	No description
PROSITE profile	PS50217	10.197	74	137	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.34E-11	76	129	No hit	No description
Pfam	PF00170	2.0E-9	76	126	IPR004827	Basic-leucine zipper domain
CDD	cd14702	2.70E-21	77	128	No hit	No description
PROSITE pattern	PS00036	0	79	94	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MTPVLCEILL SGLTVKSALR RRTHLVQSFS VVFLYCFLVL KKISMASSSS TYRSSSSSDG 60 GNNNPSSDSV VTVDERKRKR MLSNRESARR SRMRKQKHVD DLTAQINQLS NDNRQILNSL 120 TVTSQLYMKI QAENSVLTAQ MSELSTRLQS LNEIVDLVQS NGAGFGVDQI DGCGFDDRTV 180 GIDGYYDDMM SGVNHWGGSV YSNQPIMAND INMY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	75	96	RKRKRMLSNRESARRSRMRKQK
2	88	95	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to specific DNA sequences in target gene promoters. BZIP2-BZIP63-KIN10 complex binds to the ETFQO promoter to up-regulate its transcription (PubMed:29348240). {ECO:0000250\|UniProtKB:O65683, ECO:0000269\|PubMed:29348240}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa01g041280.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC007212	0.0	AC007212.7 Arabidopsis thaliana chromosome 2 clone F8D23 map PhyB, complete sequence.
GenBank	AK230244	0.0	AK230244.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL23-13-A15.
GenBank	AY037216	0.0	AY037216.1 Arabidopsis thaliana At2g18160/F8D23.6 mRNA, complete cds.
GenBank	BT000700	0.0	BT000700.1 Arabidopsis thaliana clone RAFL08-13-K01 (R11176) putative bZIP transcription factor (At2g18160) mRNA, complete cds.
GenBank	CP002685	0.0	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010413979.1	1e-121	PREDICTED: bZIP transcription factor 2
Refseq	XP_010467622.1	1e-121	PREDICTED: bZIP transcription factor 2
Swissprot	Q9SI15	1e-107	BZIP2_ARATH; bZIP transcription factor 2
TrEMBL	A0A3P6ES75	1e-119	A0A3P6ES75_BRAOL; Uncharacterized protein
STRING	XP_010413979.1	1e-121	(Camelina sativa)
STRING	XP_010467622.1	1e-121	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM501	28	154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18160.1	1e-102	basic leucine-zipper 2

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Pedrotti L, et al. Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness. Plant Cell, 2018. 30(2): p. 495-509 [PMID:29348240]