PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g041460.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 83aa    MW: 9451.32 Da    PI: 8.9416
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g041460.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.58.5e-101559345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT+  d+++  a + +  +   +W  +ar +g g++++++k ++ 
   Csa01g041460.1 15 SWTPKQDKQFEMALATYDQDtpdRWQNVARAVG-GKSAEEVKRHYE 59
                     7*****************99*************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.5781166IPR017884SANT domain
SMARTSM007173.6E-91264IPR001005SANT/Myb domain
SuperFamilySSF466893.36E-131470IPR009057Homeodomain-like
PfamPF002495.2E-81559IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-51562IPR009057Homeodomain-like
CDDcd001671.91E-71662No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
MASNSISTSR SSNSSWTPKQ DKQFEMALAT YDQDTPDRWQ NVARAVGGKS AEEVKRHYEL  60
LIRDVNDIES GRYPQPRYRN TN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-28682177RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g041460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0064395e-57AC006439.4 Arabidopsis thaliana chromosome 2 clone T30D6 map mi39, complete sequence.
GenBankCP0026855e-57CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBankDQ4876605e-57DQ487660.1 Arabidopsis thaliana clone 0000013653_0000009781 unknown protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010414205.18e-56PREDICTED: protein RADIALIS-like 4
SwissprotQ1G3C42e-38RADL4_ARATH; Protein RADIALIS-like 4
TrEMBLA0A1J3I9U81e-42A0A1J3I9U8_NOCCA; Protein RADIALIS-like 4
STRINGXP_010414205.13e-55(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18328.17e-40RAD-like 4