PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g041630.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 318aa    MW: 36543.6 Da    PI: 8.1442
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g041630.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.00015239261123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+Cp+C+  F ++  +  Hi++H
  Csa01g041630.1 239 YTCPKCNGIFDTSQKFAAHISSH 261
                     9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.787239266IPR007087Zinc finger, C2H2
PROSITE patternPS000280241261IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MSSIPNRFNI YGDREFCPID MDHNSRMPRS MFITSDSSNH GDLFSSSPSL SYQNSHVSSS  60
YFGVNNSHMT YHMMKRNIDF VSSAEYLPMA DNSRLTRVSF TQTITNQYTS IVPTNTLDTI  120
QYGIERVKRG MGSKTNIWNP VLRSPNFLDK HCKILNPEPL NVIFPCQDYA YRQQADMFSS  180
PSRHNHDQHN LQDGRPLKKI FKPTRDFEET IEDRSCEENK KSEDDGRTHS LPYEKYGPYT  240
CPKCNGIFDT SQKFAAHISS HYRTETDKER AQRVRARNKR KYGKLNLEVH GESQKINPED  300
GANGGGRSDD KINEELL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g041630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010425275.10.0PREDICTED: uncharacterized protein LOC104710391
TrEMBLD7L0761e-141D7L076_ARALL; Uncharacterized protein
STRINGXP_010425275.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19241958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G15740.11e-133C2H2-like zinc finger protein