PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g041680.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 437aa    MW: 48547.3 Da    PI: 5.3148
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g041680.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS161.28.6e-501183702253
            GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     ve L++++++v+s++l+l+q +L+rl+++ +sp+g+p++R+++yf+eAL + +++      +  + + +s+++ ++++ a k fs vs i+ fsh
  Csa01g041680.1 118 VEDLIRVVNCVDSDELQLTQVILSRLNQRlRSPTGRPLKRATFYFKEALGSLITG-----TNRNQNRLSSWSEIVQKIRAIKEFSGVSLIPLFSH 207
                     689*************************99*************************.....6777888888999********************** PP

            GRAS  96 ltaNqaIleavege............ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177
                     +t NqaI +++  +               Hi+Df+i+  +Q+++L++++a+++ +g   lR+T+v+ +  + + e++ ++e+La+fA+ l+++f+
  Csa01g041680.1 208 FTVNQAIFDSLTWQqqqhqsssssspPFAHIVDFEIGFHGQYASLMREIAEKSvNGIRFLRVTVVVME--DFAVETRLVKENLAQFAADLEIRFH 300
                     *********99765444444444433345************************9999**********4..489999******************* PP

            GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesF 253
                     +++++++++e l+++++r+ +gE+++V ++  ++r l       + ++ +++ ++++sP+vvvvv++e  + + +sF
  Csa01g041680.1 301 IEFVLMRTFEVLSFKSIRFVEGESTVVLISPVIFRRL-------NGISGFVNDLRRVSPEVVVVVDSEGLTgGVGSF 370
                     ************************************9.......33567*******************877344444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098523.97191436IPR005202Transcription factor GRAS
PfamPF035143.0E-47118370IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MRVPASSDTN SNSNLVCFNE PTSVLDLRRS PSPSPSTAEE KPLLVSDQFP LDDDDHLMRS  60
MDLDSIMKES SNFPSSPHFS TAVDPPLLPI FPDQLHPPEF PDHGYGFNNE GGGGLDFVED  120
LIRVVNCVDS DELQLTQVIL SRLNQRLRSP TGRPLKRATF YFKEALGSLI TGTNRNQNRL  180
SSWSEIVQKI RAIKEFSGVS LIPLFSHFTV NQAIFDSLTW QQQQHQSSSS SSPPFAHIVD  240
FEIGFHGQYA SLMREIAEKS VNGIRFLRVT VVVMEDFAVE TRLVKENLAQ FAADLEIRFH  300
IEFVLMRTFE VLSFKSIRFV EGESTVVLIS PVIFRRLNGI SGFVNDLRRV SPEVVVVVDS  360
EGLTGGVGSF QRVLAGGGGD LVKKIIETFL LRPRIAAAVE AAADKRGGEM MTWREAFCSA  420
GMRMVPLSQF VDFQSV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g041680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010467682.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232101e-166SCL15_ARATH; Scarecrow-like protein 15
TrEMBLR0HL020.0R0HL02_9BRAS; Uncharacterized protein
STRINGXP_010467682.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42912857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-153GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]