PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g041700.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HD-ZIP
Protein Properties Length: 221aa    MW: 25284.2 Da    PI: 5.0658
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g041700.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.18.2e-2062115457
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                     ++++++eq++ Le  Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k+
  Csa01g041700.1  62 KRKLSDEQVRMLEISFEDDHKLESERKDRLASELGLDPRQVAVWFQNRRARWKN 115
                     45899***********************************************95 PP
2HD-ZIP_I/II123.41.1e-3961152293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     +kr+ls+eqv++LE sFe ++kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k++E +y++Lk+ay++++ +++rL +ev +L+e+l e
  Csa01g041700.1  61 RKRKLSDEQVRMLEISFEDDHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKRVEDEYTKLKNAYENVVVDKCRLGSEVLQLKEQLYE 152
                     8***************************************************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.51E-1855116IPR009057Homeodomain-like
PROSITE profilePS5007117.0756116IPR001356Homeobox domain
SMARTSM003893.0E-2059120IPR001356Homeobox domain
CDDcd000861.11E-1661117No hitNo description
PfamPF000464.9E-1762115IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-2063122IPR009057Homeodomain-like
PRINTSPR000311.4E-58796IPR000047Helix-turn-helix motif
PROSITE patternPS00027091114IPR017970Homeobox, conserved site
PRINTSPR000311.4E-596112IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MNNQNVDDHN LLLISQLYPD VYTSLVPQQG EAKPARRRKR KSKSAAGGEE GGGGGNNGWF  60
RKRKLSDEQV RMLEISFEDD HKLESERKDR LASELGLDPR QVAVWFQNRR ARWKNKRVED  120
EYTKLKNAYE NVVVDKCRLG SEVLQLKEQL YEAEREIQRL AQRVEGTLIS NSPISSSVTV  180
EANQATPFFG DYDICVDGDG DNLLYSPDYF DGLEWMSQFM *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g041700.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010414438.11e-163PREDICTED: homeobox-leucine zipper protein ATHB-21-like isoform X2
SwissprotQ9ZU701e-135ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBLR0I4Z61e-141R0I4Z6_9BRAS; Uncharacterized protein
STRINGXP_010467684.11e-150(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22082677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18550.11e-123homeobox protein 21
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]