PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g043850.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 134aa    MW: 15658 Da    PI: 10.4197
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g043850.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind55.12.2e-17131062102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     F + +ye+++d++ +++isws++++sfv+ +++e+ ++ + + F  +n++ F+ +L+  gFk+++++++        weF +k+F +g+ el+ +
  Csa01g043850.1  13 FYEGVYEMVDDPSSDSIISWSKSNKSFVIRNQQELIRRKMLSRFFCRNLTEFISKLKFSGFKQMNRSSGL-------WEFGDKNFVRGRPELMVE 100
                     77889**************************9999887777777789*******************9987.......*****************9 PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     ++++ s
  Csa01g043850.1 101 MHKRVS 106
                     999865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.2E-21899IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.5E-249104IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.39E-1911103IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.4E-51336IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.2E-1713103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-56476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MAYNGYPKSG LRFYEGVYEM VDDPSSDSII SWSKSNKSFV IRNQQELIRR KMLSRFFCRN  60
LTEFISKLKF SGFKQMNRSS GLWEFGDKNF VRGRPELMVE MHKRVSMARI TERCSNQMKA  120
KAQLEEGFQN LSI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g043850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010415704.14e-95PREDICTED: heat stress transcription factor A-4c-like
TrEMBLR0G8961e-55R0G896_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010415704.12e-94(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50671450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19630.11e-17HSF family protein