PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa02317s010.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

FAR1

Protein Properties

Length: 245aa MW: 27073 Da PI: 4.9428

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa02317s010.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	78.8	9.9e-25	95	181	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Yn+YA+e+GF +r+++s ++++++e + ++C++eg++ ++ + + ++r+etrtgC+a++++k+ + ++w+v++++l+HnH++ Csa02317s010.1 95 YYNSYARELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKMVKEAN--AATSRRKETRTGCQAMIRLKLIDFDRWKVDQVKLDHNHSFD 181 9**************************************99888..899999******************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.0E-22	95	181	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MIGNSVYSPS DQSLSSPNPN LCITMEEEQM VVEGEEEEEE ELPLPIDDPA DLGIDLEDEC 60 DGLLQIETGI DDAPIAHSAP APGMEFESYD DAYSYYNSYA RELGFAIRVK SSWTKRNSKE 120 KRGAVLCCNC EGFKMVKEAN AATSRRKETR TGCQAMIRLK LIDFDRWKVD QVKLDHNHSF 180 DPERAHNSKS HKTTKSSSAS ANTKPPLHVQ VRTINLYRAL AVPHGTSCSS SSSTSPGGDH 240 SLSSR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa02317s010.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010417761.1	1e-141	PREDICTED: protein FAR1-RELATED SEQUENCE 8-like isoform X2
Swissprot	Q9S793	4e-82	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	A0A1J3FVX0	1e-100	A0A1J3FVX0_NOCCA; Protein FAR1-RELATED SEQUENCE 8
STRING	XP_010417761.1	1e-140	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM32202	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	9e-59	FAR1-related sequence 8

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]