PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02520s010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family BES1
Protein Properties Length: 228aa    MW: 24367.1 Da    PI: 6.3933
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02520s010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF82232.62.7e-1036383145
          DUF822  83 gssasaspesslqsslkssalaspvesysaspksssfpspssldsislasaasllpvlsvlsl 145
                     g+ ++ s++ss+q s++ssa++sp++sy+ sp sssfpsps++d ++++    llp+l++ ++
  Csa02520s010.1   3 GTPTNLSTNSSIQPSPQSSAFPSPAPSYHGSPVSSSFPSPSRYDGNHSS--YLLLPFLHNIAS 63 
                     7788999***************************************887..899999998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.9E-6347IPR008540BES1/BZR1 plant transcription factor, N-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MSGTPTNLST NSSIQPSPQS SAFPSPAPSY HGSPVSSSFP SPSRYDGNHS SYLLLPFLHN  60
IASSIPANLP PLRISNSAPV TPPLSSPTSR GSKRKLTSEQ LLPNGGGSLH ALRHPLFAIS  120
APSSPTRRAG HQTPPTIPEC DESEEDSIED SGRWINFQST APTSPTFNLV KQTSMVIDMK  180
RSDWGMNGRG AEFEFENGTV KPWEGEMIHE VGVEDLELTL GGTKTRC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02520s010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0503940.0AY050394.1 Arabidopsis thaliana AT4g36780/C7A10_580 mRNA, complete cds.
GenBankAY0973570.0AY097357.1 Arabidopsis thaliana AT4g36780/C7A10_580 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284125.11e-138BES1/BZR1 homolog protein 2
SwissprotQ94A431e-135BEH2_ARATH; BES1/BZR1 homolog protein 2
TrEMBLR0H0R81e-137R0H0R8_9BRAS; Uncharacterized protein
STRINGXP_010437306.11e-163(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115122333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36780.13e-43BES1/BZR1 homolog 2