PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa02g001230.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

YABBY

Protein Properties

Length: 204aa MW: 22369.5 Da PI: 9.7741

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa02g001230.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	234.1	3.3e-72	6	162	23	170
YABBY 23 avsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee......lleelkveeenlksnvekeesastsvssekl...senedee 108 vsvP +slfk+vtvrCGhC++llsv++++++ ll+++s++++s+ ++ llee+++ ++n+++n++++++ +++++e+l +n +e Csa02g001230.1 6 QVSVPPSSLFKTVTVRCGHCSNLLSVTVNMRTLLLPSVSNIGHSFIPPpppppnLLEEMRSGGQNINMNMMMSHHGAAHHPNESLamaARNGLQE 100 59*****************************************999999999************************99977788999 PP YABBY 109 vprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +pr+pp++rPPekrqrvPsaynrfikeeiqrika+nPdishreafsaaaknWahfP+ihfgl Csa02g001230.1 101 MPRPPPANRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 162 ************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.5E-55	6	162	IPR006780	YABBY protein
SuperFamily	SSF47095	6.02E-8	107	155	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	6.8E-5	110	156	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MCDCRQVSVP PSSLFKTVTV RCGHCSNLLS VTVNMRTLLL PSVSNIGHSF IPPPPPPPNL 60 LEEMRSGGQN INMNMMMSHH GAAHHPNESL AMAARNGLQE MPRPPPANRP PEKRQRVPSA 120 YNRFIKEEIQ RIKAGNPDIS HREAFSAAAK NWAHFPHIHF GLMADHPPTK KANVRQQQEG 180 EDGMMGSREG FYGSAANVGV TNN*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. Regulates the initiation of embryonic shoot apical meristem (SAM) development (PubMed:10457020, PubMed:12417699, PubMed:19837869). Contributes to the repression of KNOX genes (STM, KNAT1/BP and KNAT2) to avoid ectopic meristems. Binds DNA without sequence specificity (PubMed:10457020, PubMed:12417699). {ECO:0000269\|PubMed:10457020, ECO:0000269\|PubMed:12417699, ECO:0000269\|PubMed:19837869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa02g001230.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK316696	0.0	AK316696.1 Arabidopsis thaliana AT4G00180 mRNA, complete cds, clone: RAFL06-81-K07.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010426672.1	1e-150	PREDICTED: axial regulator YABBY 3-like isoform X2
Swissprot	Q9XFB1	1e-112	YAB3_ARATH; Axial regulator YABBY 3
TrEMBL	D7M5S0	1e-116	D7M5S0_ARALL; Uncharacterized protein
STRING	XP_010426665.1	1e-133	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2217	28	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00180.2	1e-118	YABBY family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Yadav RK, et al. Plant stem cell maintenance involves direct transcriptional repression of differentiation program. Mol. Syst. Biol., 2013. 9: p. 654 [PMID:23549482]