PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g001590.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 409aa    MW: 46677.4 Da    PI: 9.8359
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g001590.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.75.5e-086312248
                     T-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqkyl 48
                     ++W++I++ +  gR +kqc++rw+++l
   Csa02g001590.1  6 PQWSKISKQLS-GRIGKQCRERWHNHL 31
                     58*********.*************97 PP
2Myb_DNA-binding50.16.5e-163879245
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                      +WT eE+++lv+  +++G++ W+ Ia+ ++ gRt++++k++w+
   Csa02g001590.1 38 TAWTREEELILVQSQREHGNK-WAEIAKLLP-GRTENNIKNHWN 79
                     68*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0071726133IPR001005SANT/Myb domain
PROSITE profilePS5129411.783131IPR017930Myb domain
CDDcd001671.05E-4231No hitNo description
Gene3DG3DSA:1.10.10.608.6E-17639IPR009057Homeodomain-like
PfamPF002494.3E-6731IPR001005SANT/Myb domain
SuperFamilySSF466891.02E-271189IPR009057Homeodomain-like
PROSITE profilePS5129424.3813286IPR017930Myb domain
SMARTSM007176.1E-153684IPR001005SANT/Myb domain
PfamPF002493.9E-143779IPR001005SANT/Myb domain
CDDcd001675.96E-113979No hitNo description
Gene3DG3DSA:1.10.10.604.7E-204086IPR009057Homeodomain-like
SuperFamilySSF495623.47E-7259394IPR000008C2 domain
CDDcd040511.71E-27261387No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MKNDRPQWSK ISKQLSGRIG KQCRERWHNH LNPTIKKTAW TREEELILVQ SQREHGNKWA  60
EIAKLLPGRT ENNIKNHWNC SVKKRLEQFP SNLSSGSRPS GFEYNFFNQK ILQIEEAAAK  120
SPLRDSLELT LGPTNWRSTP SSTSSLRGDE SISSSVESDW SSLNEVSEST QETPQSSNDN  180
ECIQEVKEIK KRLRMAASTF NTPSIISKRS SPALKRHRQN ELNTPFQIDG GSHMPSEEEE  240
HSTSPFSKYR LAKHRSRMSR KIQITGISAE DLVYNRRPVK KNAVVAFGMA GNYWKHPMRT  300
SVDETGGDYP MWEDKLETEF ASGKEELPTV MYVEVSCRSS SGEDKRVGTA RVPVKDFTGE  360
YAPEGFLHCL SYRLWDEYGK RNGIVNFSVR IVSTKSDLKS GLRPFWLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-3278626105MYB PROTO-ONCOGENE PROTEIN
1h8a_C3e-3278649128MYB TRANSFORMING PROTEIN
1mse_C1e-3278626105C-Myb DNA-Binding Domain
1msf_C1e-3278626105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Required for proper circadian rhythm (PubMed:18426557). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:18426557}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g001590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1516471e-100AF151647.1 Arabidopsis thaliana PC-MYB2 (PC-MYB2) mRNA, complete cds.
GenBankAF2180541e-100AF218054.2 Arabidopsis thaliana putative c-myb-like transcription factor (MYB3R2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019088627.11e-173PREDICTED: myb-like protein A isoform X2
SwissprotQ9SPN31e-100MB3R2_ARATH; Transcription factor MYB3R-2
TrEMBLR0FHY71e-121R0FHY7_9BRAS; Uncharacterized protein
STRINGXP_010427153.11e-170(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16672887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00540.21e-102myb domain protein 3r2
Publications ? help Back to Top
  1. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]