PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g001600.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 65aa    MW: 7253.97 Da    PI: 5.8046
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g001600.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.51.5e-083865127
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktI 27
                     +g WT eEdell +avk++ g+ +Wk I
   Csa02g001600.1 38 KGGWTSEEDELLTNAVKMYKGHtSWKNI 65
                     688*****************9999*987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.8283365IPR017930Myb domain
SuperFamilySSF466893.73E-53465IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.6E-73565IPR009057Homeodomain-like
PfamPF002499.0E-63865IPR001005SANT/Myb domain
CDDcd001671.15E-44165No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 65 aa     Download sequence    Send to blast
MTTESNDLNR SESESDISAI DFSLGCKRVS GPTRRSTKGG WTSEEDELLT NAVKMYKGHT  60
SWKNI
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Required for proper circadian rhythm (PubMed:18426557). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:18426557}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g001600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010427153.13e-38PREDICTED: myb-related protein B-like isoform X1
SwissprotQ9SPN31e-16MB3R2_ARATH; Transcription factor MYB3R-2
TrEMBLR0FHY71e-16R0FHY7_9BRAS; Uncharacterized protein
STRINGXP_010427153.11e-37(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00540.21e-20myb domain protein 3r2
Publications ? help Back to Top
  1. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]