PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g004840.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 491aa    MW: 53889.4 Da    PI: 6.1175
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g004840.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.54.2e-31237296159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+
  Csa02g004840.1 237 VNDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDTTILTTTYEGNHNHP 296
                     58*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-33222298IPR003657WRKY domain
SuperFamilySSF1182907.85E-28230298IPR003657WRKY domain
PROSITE profilePS5081128.908232298IPR003657WRKY domain
SMARTSM007741.6E-37237297IPR003657WRKY domain
PfamPF031061.5E-26238296IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MEEHTQDPRE IAFLHSGEFL RGDSDSKDDQ PNESSEEHRH ESPIKEVDFF SAKSQPYDDI  60
GHVRMTTTIV GSSGFNDDLV MVNSWHGTSS DDGDDKTKTK TQIIRLKLEL ARLHEENYKL  120
KHLLDEISES YNNLQRRVLL VRQTQVEGLH KQHEDIPQAG SSQALEDMNN EIAATTLKRR  180
SPDDVDDRDM HQGRSPKTPR LDQNKSNNPD EQQNPHDQLP FRKARVSVRA RSDATTVNDG  240
CQWRKYGQKM AKGNPCPRAY YRCTMAVGCP VRKQVQRCAE DTTILTTTYE GNHNHPLPPS  300
ATAMAATTSA AAAMLLSGST TSNLHQTLSS PSATSSSSFY NNFPYTSTIA TLSASAPFPT  360
ITLDLTNPPR PLQPPPQFLS QYGPAAFLPN ANQIRSINNN NNPQLLLPNL LGPQALPRDM  420
VDSVRAAIAM DPNFTAALAA AISNIIGGGN NDNNNNNDII NDNKVDAKSG GSSNGDSPQL  480
PQSCTTFSTN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-22224299175WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g004840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4801650.0AF480165.1 Arabidopsis thaliana WRKY transcription factor 47 (WRKY47) mRNA, complete cds.
GenBankAK2295220.0AK229522.1 Arabidopsis thaliana mRNA for putative DNA-binding protein, complete cds, clone: RAFL17-27-A10.
GenBankBT0087040.0BT008704.1 Arabidopsis thaliana clone RAFL17-27-A10 (R50576) putative WRKY family transcription factor (At4g01720) mRNA, complete cds.
GenBankBT0290240.0BT029024.1 Arabidopsis thaliana At4g01720 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010428690.10.0PREDICTED: probable WRKY transcription factor 47
SwissprotQ9ZSI70.0WRK47_ARATH; Probable WRKY transcription factor 47
TrEMBLD7M4960.0D7M496_ARALL; WRKY DNA-binding protein 47
TrEMBLQ0WNC30.0Q0WNC3_ARATH; At4g01720
STRINGXP_010428690.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71562743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.10.0WRKY family protein