PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa02g005920.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bZIP

Protein Properties

Length: 417aa MW: 45776.4 Da PI: 5.0055

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa02g005920.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	48.5	1.9e-15	217	270	3	56
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 ++k+ rr+ +NRe+ArrsR+RK++++ Le+ v eL++e ++L k+l++++ ++ Csa02g005920.1 217 DVKKSRRMLSNRESARRSRRRKQEQTSDLETQVNELKGEHSSLLKQLSNMNHKY 270 789*****************************************9888887766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.8E-20	215	279	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.9E-13	216	269	No hit	No description
PROSITE profile	PS50217	11.208	217	271	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	9.7E-15	217	271	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.49E-12	218	269	No hit	No description
PROSITE pattern	PS00036	0	222	237	IPR004827	Basic-leucine zipper domain
Pfam	PF12498	8.2E-13	286	380	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MMNSIFSIDD FSDPFWESPP IPLNPDSSKS VTAAEDQSEW TFEMFLEEFS SSAVSSEPLG 60 NDAIVGVSSA QSLPSVSGQN DFEEDDSRFR DRDSSGNRDC AAAAAATVVD DYHRVLKNKL 120 ESECATVVAL RAGFVKPEDS TSSPETQFQP VQSSPLTQGS LVSPGGEVGV ITSSLPAELK 180 KTGVPMKQVT SGSSREYSDD DDLDEENETT GSLNPEDVKK SRRMLSNRES ARRSRRRKQE 240 QTSDLETQVN ELKGEHSSLL KQLSNMNHKY DDAAVGNRIL KADIETLRAK VKMAEETVKR 300 VTGMNPMLLG RSNGHNNNNR MPLTGNHRMD SSSNIPAFQP HSNLNHMSNP NIGIPTTLPP 360 RLGNNFVPPP YLNSQTNSQM PRIRNGQNHH VAPNANPYGW TTEPQNDSAW PKKCVD*

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MMNSIFSIDD FSDPFWESPP IPLNPDSSKS VTAAEDQSEW TFEMFLEEFS SSAVSSEPLG  60
NDAIVGVSSA QSLPSVSGQN DFEEDDSRFR DRDSSGNRDC AAAAAATVVD DYHRVLKNKL  120
ESECATVVAL RAGFVKPEDS TSSPETQFQP VQSSPLTQGS LVSPGGEVGV ITSSLPAELK  180
KTGVPMKQVT SGSSREYSDD DDLDEENETT GSLNPEDVKK SRRMLSNRES ARRSRRRKQE  240
QTSDLETQVN ELKGEHSSLL KQLSNMNHKY DDAAVGNRIL KADIETLRAK VKMAEETVKR  300
VTGMNPMLLG RSNGHNNNNR MPLTGNHRMD SSSNIPAFQP HSNLNHMSNP NIGIPTTLPP  360
RLGNNFVPPP YLNSQTNSQM PRIRNGQNHH VAPNANPYGW TTEPQNDSAW PKKCVD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	231	238	RRSRRRKQ
2	233	238	SRRRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the C-box-like motif (5'-TGCTGACGTCA-3') and G-box-like motif (5'-CCACGTGGCC-3'), ABRE elements, of gene promoters. Binds to the 5'-ACGT-3' motif of seed storage protein (SSP) encoding gene promoters (e.g. At2S and CRU3) and promotes their expression in seeds when in complex with ABI3 and BZIP53. Involved in the defense responses to the biotrophic pathogen Hyaloperonospora parasitica and oxidative stress responses; mediates positively cell death (PubMed:12657652, PubMed:16957775, PubMed:19261733, PubMed:19531597). Promotes BZIP53-mediated response to hypoosmolarity stress that leads to POX1/PRODH1 accumulation (PubMed:16810321). {ECO:0000269\|PubMed:12657652, ECO:0000269\|PubMed:16810321, ECO:0000269\|PubMed:16957775, ECO:0000269\|PubMed:19261733, ECO:0000269\|PubMed:19531597}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa02g005920.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF310222	0.0	AF310222.1 Arabidopsis thaliana bZIP protein BZO2H1 mRNA, complete cds, alternatively spliced.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010429966.1	0.0	PREDICTED: basic leucine zipper 10-like isoform X1
Swissprot	O22763	0.0	BZP10_ARATH; Basic leucine zipper 10
TrEMBL	A0A178V4D9	0.0	A0A178V4D9_ARATH; BZO2H1
STRING	XP_010429966.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14871	17	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02640.2	0.0	bZIP family protein

Publications ? help Back to Top
Pedrotti L, et al. Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness. Plant Cell, 2018. 30(2): p. 495-509 [PMID:29348240]