PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g005960.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 400aa    MW: 43990.6 Da    PI: 9.4196
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g005960.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61.1e-0583105123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k F r  nL+ H r H
  Csa02g005960.1  83 FVCEICNKGFQRDQNLQLHRRGH 105
                     89*******************88 PP
2zf-C2H212.90.00034160182123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k +  +s+ k H + +
  Csa02g005960.1 160 WKCEKCSKFYAVQSDWKAHTKIC 182
                     58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.2E-582105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.17E-682105No hitNo description
SMARTSM003550.01783105IPR015880Zinc finger, C2H2-like
PfamPF121716.1E-583105IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.94983105IPR007087Zinc finger, C2H2
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
SuperFamilySSF576674.17E-6155180No hitNo description
SMARTSM00355180160180IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MDMFSSHSLS YKLTSLSTEA SASSGNTLST IQGFSGFNNV TSSLCTHTET HKNKKRRGLP  60
GNPDPDAEVI ALSPKTLLAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQKSSKEQQ  120
KKKVYVCPET KCAHHHPSRA LGDLTGIKKH FCRKHGEKKW KCEKCSKFYA VQSDWKAHTK  180
ICGTREYRCD CGTLFSRKDS FITHRAFCDA LAEESARIIS TSSSINLTNP SPNIQDNHRF  240
MVNKSSPLLF TSPLCVEPSH STAALPSTAA LSATALLQKA TALSSSAIGG AGQTRSIGHH  300
HRHLTNVNEL LGVDRVMVTS SEYDQLASTW QKADRLTRDF LGLTGHGVQV SVRPGDMLGY  360
AGGVAFPVSA YDTESHHDHE SSFQKAYDLG FSGAHHHTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-35156224371Zinc finger protein JACKDAW
5b3h_F2e-35156224371Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g005960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936720.0AB493672.1 Arabidopsis thaliana At4g02670 mRNA for hypothetical protein, partial cds, clone: RAAt4g02670.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010430007.10.0PREDICTED: protein indeterminate-domain 12-like
SwissprotO227590.0IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLD7M3F30.0D7M3F3_ARALL; Atidd12-domain 12
STRINGXP_010430007.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.10.0indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]