PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g011550.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 162aa    MW: 18642 Da    PI: 6.9604
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g011550.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like781.2e-241568255
         G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                     r++Wt + H+ Fveave LGG+  AtPk+il+ m+  +Ltl+++kSHLQ+YR 
  Csa02g011550.1 15 SRMHWTDDRHHLFVEAVEFLGGERTATPKKILNYMDEGDLTLSQIKSHLQMYRN 68
                    69***************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-221169IPR009057Homeodomain-like
PROSITE profilePS512949.9451171IPR017930Myb domain
SuperFamilySSF466896.27E-161571IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-231570IPR006447Myb domain, plants
PfamPF002492.9E-71667IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MRDAIVRSYV RSTMSRMHWT DDRHHLFVEA VEFLGGERTA TPKKILNYMD EGDLTLSQIK  60
SHLQMYRNKK EGVSVKERRM IREMNQRQSQ QYLQIYEYLQ DAIQNEISTK KVTPTEVSCK  120
SLYQSSRVGE NENKANDVIA AGDGANGEED MSLELTLGLK Y*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g011550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010432590.11e-118PREDICTED: putative Myb family transcription factor At1g14600
TrEMBLR0HDE72e-69R0HDE7_9BRAS; Uncharacterized protein
STRINGXP_010432590.11e-117(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04580.12e-52G2-like family protein