PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g022840.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 351aa    MW: 38390.7 Da    PI: 7.1901
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g022840.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.19.8e-141454141
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41
                     +g+WT+eEd++l+d+++ +G g+W++ ++  g+ R++k+c+
   Csa02g022840.1 14 KGAWTKEEDQRLIDYIRNHGEGCWRSLPKSAGLLRCGKSCR 54
                     79******************************99******8 PP
2Myb_DNA-binding262.1e-0854772347
                     -HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47
                     +W++Ia +++ gRt++++k++w+++
   Csa02g022840.1 54 RWSLIAGRLP-GRTDNEIKNYWNTH 77
                     4*********.************97 PP
3Myb_DNA-binding26.81.2e-082022252347
                      -HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  23 tWktIartmgkgRtlkqcksrwqky 47 
                      +W++Ia +++ gRt++++k++w+++
   Csa02g022840.1 202 SWSLIAGRLP-GRTDNEIKNYWNTH 225
                      7*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.7E-15554IPR009057Homeodomain-like
PROSITE profilePS5129419.034982IPR017930Myb domain
SMARTSM007174.0E-161380IPR001005SANT/Myb domain
PfamPF002491.2E-111454IPR001005SANT/Myb domain
SuperFamilySSF466896.67E-151479IPR009057Homeodomain-like
CDDcd001671.33E-121678No hitNo description
Gene3DG3DSA:1.10.10.602.6E-105582IPR009057Homeodomain-like
SMARTSM007170.6186228IPR001005SANT/Myb domain
SuperFamilySSF466892.12E-7201236IPR009057Homeodomain-like
PfamPF002492.5E-6202225IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-12202227IPR009057Homeodomain-like
PROSITE profilePS500906.307203226IPR017877Myb-like domain
CDDcd001678.54E-6203226No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDQRLIDYIR NHGEGCWRSL PKSAGLLRCG KSCRWSLIAG  60
RLPGRTDNEI KNYWNTHIKR KLLSHGIDPQ THRPINDTKT VPSQVVVVGP IQNDAVEYSL  120
SNLAVKQENS SGASTSGTTT DEDLRQNGEC YYYSGDNSER IELNLDLTLG FGSGSGQVIG  180
AGLLADSKPW RDQVMAARLS LSWSLIAGRL PGRTDNEIKN YWNTHIKRKL LSHGIDPQTH  240
RPINDTKTVP SQVVVVGPIQ NDAVEYSLSN LAVKQENSSG ASTSGTTTDE DLRQNGECYY  300
YSGDNSERIE LNLDLTLGFG SGSGQVIGAG LLADSKPWRD QVMAARLSLS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g022840.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010435778.11e-140PREDICTED: transcription repressor MYB6-like isoform X1
RefseqXP_010435785.11e-140PREDICTED: transcription repressor MYB6-like isoform X2
SwissprotQ388511e-112MYB6_ARATH; Transcription repressor MYB6
TrEMBLR0HCS41e-124R0HCS4_9BRAS; Uncharacterized protein
STRINGXP_010435785.11e-139(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.11e-106myb domain protein 6