PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa02g024820.2

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

MYB_related

Protein Properties

Length: 127aa MW: 14399.4 Da PI: 8.7472

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa02g024820.2	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.3	6.4e-12	51	80	1	30
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 r++W+ eEde l+ avk++G g+W++Ia++ Csa02g024820.2 51 RKKWSSEEDEELIAAVKRHGEGSWALIAKE 80 79**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.50.100	1.4E-4	3	43	No hit	No description
PROSITE profile	PS51294	10.976	46	100	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-12	49	92	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.15E-9	50	92	IPR009057	Homeodomain-like
SMART	SM00717	7.4E-5	50	100	IPR001005	SANT/Myb domain
Pfam	PF00249	8.6E-10	51	80	IPR001005	SANT/Myb domain
CDD	cd11660	1.88E-11	52	93	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
MILQSPKVGF YRRSKTIKGK RMPSSCKEKD QVKEGQILCY IEQLGGQFQR RKKWSSEEDE 60 ELIAAVKRHG EGSWALIAKE EFEGERTPSQ LSQVRRIFVA GSCSSSSFCQ FKTDNSEYLS 120 LADHCL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa02g024820.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT000438	6e-64	BT000438.1 Arabidopsis thaliana putative acetyl-CoA carboxylase biotin-containing subunit (At3g15690) mRNA, complete cds.
GenBank	BT001187	6e-64	BT001187.1 Arabidopsis thaliana putative acetyl-CoA carboxylase biotin-containing subunit (At3g15690) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019089989.1	1e-88	PREDICTED: uncharacterized protein LOC104720505 isoform X3
TrEMBL	R0HZM9	5e-25	R0HZM9_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_010467819.1	1e-69	(Camelina sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58220.1	2e-23	MYB_related family protein