PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa02g026630.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

DBB

Protein Properties

Length: 251aa MW: 27407.2 Da PI: 4.6428

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa02g026630.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	17	1.2e-05	4	44	5	38
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38 C+ +e+ e++ C +++ lC+ C + H+ H+ Csa02g026630.1 4 LCEVCEKAEAEVLCCSDEAVLCKPCDIKVHEAnkifqrhHR 44 7*****************************76778888444 PP
2	zf-B_box	25.2	3.3e-08	60	97	3	38
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeH..kgHt 38 ++ C+ ++e + +fC +++ llC+dC ++H ++H+ Csa02g026630.1 60 APLCDICQERKGYFFCIEDRALLCNDCDGAIHtcNSHQ 97 689****99******************9434487 PP
3	zf-B_box	17.8	6.8e-06	161	186	15	38
zf-B_box 15 qlfCedCqqllCedClleeH..kgHt 38 +fC +++ llC+dC ++H ++H+ Csa02g026630.1 161 YFFCIEDRALLCNDCDGAIHtcNSHQ 186 69*****************9434487 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.153	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	2.72E-5	3	47	No hit	No description
SMART	SM00336	4.4E-6	4	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.186	58	101	IPR000315	B-box-type zinc finger
SMART	SM00336	3.5E-11	58	101	IPR000315	B-box-type zinc finger
Pfam	PF00643	3.3E-6	60	97	IPR000315	B-box-type zinc finger
CDD	cd00021	6.68E-7	61	101	No hit	No description
SMART	SM00336	0.012	152	190	IPR000315	B-box-type zinc finger
CDD	cd00021	0.0029	157	190	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MKILCEVCEK AEAEVLCCSD EAVLCKPCDI KVHEANKIFQ RHHRVALQKD AASATTSSGA 60 PLCDICQERK GYFFCIEDRA LLCNDCDGAI HTCNSHQRFL LPGVQVSDQS LTENSGCSTS 120 FSSETYQTHS KASLNSQYSN EETEAGNSAE IDKNPSERKG YFFCIEDRAL LCNDCDGAIH 180 TCNSHQRFLL PGVQVSDQSL TENSGCSTSF SSETYQTHSK ASLNSQYSNE ETEAGNSAEI 240 DKNPSVILNP *

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in seedling photomorphogenesis. {ECO:0000250\|UniProtKB:Q9SJU5}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa02g026630.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY122916	1e-180	AY122916.1 Arabidopsis thaliana putative zinc-finger protein (At4g10240) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010437394.1	1e-111	PREDICTED: B-box zinc finger protein 23
Swissprot	O82617	9e-92	BBX23_ARATH; B-box zinc finger protein 23
TrEMBL	D7LY29	8e-95	D7LY29_ARALL; Zinc finger (B-box type) family protein
STRING	XP_010437394.1	1e-110	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12502	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G10240.1	4e-94	DBB family protein

Publications ? help Back to Top
Zhang X, et al. A PIF1/PIF3-HY5-BBX23 Transcription Factor Cascade Affects Photomorphogenesis. Plant Physiol., 2017. 174(4): p. 2487-2500 [PMID:28687557]