PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g029590.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 484aa    MW: 53829.1 Da    PI: 5.3268
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g029590.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS333.15.3e-1021044761373
            GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                     lv+lL+++Aea +  +++  l++ +Larl++l+sp + ++m+Rlaa+ft +L++ l r  +++ +  + + +  ++++++++a+++++++sP+++
  Csa02g029590.1 104 LVHLLVAAAEASTGANKSreLTRVILARLKDLVSPGDrTNMERLAAHFTDGLSKLLER--DNVLRPNQHRGD-VYDQADVISAFQMLQNMSPYVN 195
                     689********9986665459**************9989*******************..666655544444.366******************* PP

            GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183
                     f++lt+ qaIle+v+ e+r+Hi+D+di +G+QWp+L+qaL sR+   ++ +lRiT+++++++g  s  +++e g+rL+ fAe++g pf+f+    
  Csa02g029590.1 196 FGYLTTTQAILESVKYERRIHIVDYDIAEGIQWPSLMQALLSRNtgTSAQHLRITALSRATNGkkSVCAVQEAGRRLTAFAESIGQPFSFHH-CK 289
                     ********************************************655577*********9999888899**********************9.67 PP

            GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpr 277
                      + ++++ ++L++ +gEa+++n++l+l r+ +++ ++     ++L   ++l+Pk+v++v++e+ + +++ Fl rf++ l+ +sa+fdslea+l+ 
  Csa02g029590.1 290 LENDAFKSSSLKLVRGEAVVINCMLHLPRFSHKTPNSVI---SFLLEARTLNPKLVTLVHEEVGLmGNQCFLYRFMDLLHQFSAIFDSLEAGLSI 381
                     799***************************977777666...9*********************99***************************** PP

            GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvS 371
                     ++ +r +vEr+++g+++ n+++  +a+   + e++++W ++le+ GF+++++s  + +qaklll+ ++ dgy+vee  ++ lvlgWk+r+L+s+S
  Csa02g029590.1 382 TNPARGFVERVFIGPWVANWLTRITAD-DSEVESFASWPQWLETNGFEAMEVSFANRCQAKLLLSLFN-DGYSVEELgRNGLVLGWKSRRLMSAS 474
                     **************************9.9999************************************.******98688999************ PP

            GRAS 372 aW 373
                     +W
  Csa02g029590.1 475 FW 476
                     ** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.97178457IPR005202Transcription factor GRAS
PfamPF035141.8E-99104476IPR005202Transcription factor GRAS
Gene3DG3DSA:1.25.40.805.6E-4134214No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MTMNYPYEDF LDLFFSTKTN TPAEAASTSS CGYSLNDLDV DWGCDFRDVI ESIMGDEGVL  60
METESAPMLH GQEGICNSAS TGLSVTDGVI VEEPKLDESK GLRLVHLLVA AAEASTGANK  120
SRELTRVILA RLKDLVSPGD RTNMERLAAH FTDGLSKLLE RDNVLRPNQH RGDVYDQADV  180
ISAFQMLQNM SPYVNFGYLT TTQAILESVK YERRIHIVDY DIAEGIQWPS LMQALLSRNT  240
GTSAQHLRIT ALSRATNGKK SVCAVQEAGR RLTAFAESIG QPFSFHHCKL ENDAFKSSSL  300
KLVRGEAVVI NCMLHLPRFS HKTPNSVISF LLEARTLNPK LVTLVHEEVG LMGNQCFLYR  360
FMDLLHQFSA IFDSLEAGLS ITNPARGFVE RVFIGPWVAN WLTRITADDS EVESFASWPQ  420
WLETNGFEAM EVSFANRCQA KLLLSLFNDG YSVEELGRNG LVLGWKSRRL MSASFWASHE  480
SNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-41914767378Protein SCARECROW
5b3h_A3e-41914766377Protein SCARECROW
5b3h_D3e-41914766377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g029590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010438468.10.0PREDICTED: scarecrow-like protein 26
SwissprotQ9SUF50.0SCL26_ARATH; Scarecrow-like protein 26
TrEMBLR0HD470.0R0HD47_9BRAS; Uncharacterized protein
STRINGXP_010438468.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99142736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.10.0GRAS family protein