PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g035340.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ARR-B
Protein Properties Length: 474aa    MW: 53819.2 Da    PI: 6.3553
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g035340.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like76.63.2e-24219272155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k r++W  eLH++F++av+ L G++kA+Pk+ile+m+v+ +++e+v+SHLQk+R+
  Csa02g035340.1 219 KRRVVWDGELHKKFLDAVNFL-GHHKAVPKKILEIMNVENISRENVASHLQKFRM 272
                     689******************.********************************7 PP
2Response_reg48.35.4e-17421471108
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                     vl+ d++p+ + +l++ l++ +y +v+++ +   a+ ll+++++D+ ++  + ++ d ++ ++ei +e  +l ii+++  ++ + +++ ++ Ga 
  Csa02g035340.1  42 VLVFDEDPAYLLILERHLQEFQY-QVTTCNEEGVAISLLRNNKFDIAMIQANNSNGDRIRCISEIGSEM-DLAIIMISKDDSIQSVVKWMSTGAI 134
                     7999*******************.*****************************************7755.8************************ PP

                     EEEESS--HHHHH CS
    Response_reg  96 dflsKpfdpeelv 108
                     d+l Kp+ p++l+
  Csa02g035340.1 135 DYLIKPIRPDDLR 147
                     **********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.7E-2138164IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.4E-2138158No hitNo description
SMARTSM004484.5E-640150IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011025.54941154IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.6E-1142147IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.15E-1143158No hitNo description
Gene3DG3DSA:1.10.10.607.9E-23216276IPR009057Homeodomain-like
SuperFamilySSF466894.12E-17217276IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-23219272IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MAETLDHGGV PASDDGGGRP SRDHPNNISD MFPSNFPEGL RVLVFDEDPA YLLILERHLQ  60
EFQYQVTTCN EEGVAISLLR NNKFDIAMIQ ANNSNGDRIR CISEIGSEMD LAIIMISKDD  120
SIQSVVKWMS TGAIDYLIKP IRPDDLRIIF KHVVKKMLGR RSLVTVEAEE KAAGEKSSSV  180
GDSTIRNPNK RQRSSSPNAE VNEEDHNDHD RVCASSSKKR RVVWDGELHK KFLDAVNFLG  240
HHKAVPKKIL EIMNVENISR ENVASHLQKF RMGMKKENEK IKSEETTNLS LITPQEGIMY  300
VGAAASQYFR EKIFQLPTHH VNNIPQPSYV PQHTTNPNNL MTHLEHHYDE AFAAVSGKDL  360
VMNHQYHHHH HHHHQTSDFT VEETFGYNNF QEEEQPAAAL MLTPNPDEVE LYPCQLEYTY  420
LERRNNHEAG TSSSMLNLPH LISPPYTYSL DQESGGFSYK RDVTRPINYN KSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A9e-19215276162ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g035340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019085978.10.0PREDICTED: putative two-component response regulator-like APRR4
SwissprotQ9FJ161e-127APRR4_ARATH; Putative two-component response regulator-like APRR4
TrEMBLA0A087G9M41e-133A0A087G9M4_ARAAL; Uncharacterized protein
STRINGXP_010471835.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132221624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49240.11e-120pseudo-response regulator 4