PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa02g039150.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NF-YC

Protein Properties

Length: 211aa MW: 23314.7 Da PI: 5.1069

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa02g039150.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	120.7	6.4e-38	36	135	1	100
NF-YC 1 qlksfwekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 q+++f ++qi++a++ ++helP arikki+k+++d++m+++eaP+llskace++i++lt+rswl++ + ++ +k+sdi+ avtr f+fl i Csa02g039150.1 36 QIRNFCIEQIGSASNTRKHELPPARIKKIMKSNPDLNMVATEAPILLSKACEMLIVDLTMRSWLNTLKRGQNKIKRSDISVAVTRDLSFTFLGHI 130 789****************************************************************************************** PP NF-YC 96 vprde 100 vprde Csa02g039150.1 131 VPRDE 135 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	3.84E-21	45	137	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	7.0E-25	48	118	IPR009072	Histone-fold
Pfam	PF00808	3.4E-14	55	118	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
METNADHHLR PLQPRPSFSN PLLSSFYPRP IPYPLQIRNF CIEQIGSASN TRKHELPPAR 60 IKKIMKSNPD LNMVATEAPI LLSKACEMLI VDLTMRSWLN TLKRGQNKIK RSDISVAVTR 120 DLSFTFLGHI VPRDESANVD DPRFVNMLIP RSEDLPPGMV IGHPVLGCNG MYFMPPQMQE 180 LPAAPGDGEE EEAVGDGEEA AGEIEESSGN *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	1e-23	42	133	4	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa02g039150.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010472764.1	1e-155	PREDICTED: nuclear transcription factor Y subunit C-7-like
Swissprot	Q9FGP8	5e-68	NFYC7_ARATH; Nuclear transcription factor Y subunit C-7
TrEMBL	C0SVT1	1e-65	C0SVT1_ARATH; Uncharacterized protein At5g50470 (Fragment)
STRING	XP_010472764.1	1e-154	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM20210	4	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50470.1	2e-60	nuclear factor Y, subunit C7

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]