PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa02g044680.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 206aa MW: 23220.5 Da PI: 9.901

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa02g044680.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.4	2.1e-07	28	79	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+++ f+ Lr lP ++K ++ + Av +Ik+ q Csa02g044680.1 28 KLLHRNMERQRRQEMAILFASLRNQLPLkY---IKGKRAMSDHVNGAVTFIKDTQ 79 567999********************77...99999999********9866 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.02E-11	23	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.25E-8	24	83	No hit	No description
PROSITE profile	PS50888	10.925	26	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.0E-7	28	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.0E-5	28	79	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MDPCNNPKKT RRQSHMPHVG DETKKEKKLL HRNMERQRRQ EMAILFASLR NQLPLKYIKG 60 KRAMSDHVNG AVTFIKDTQT RIQELSARRD ELKRETGDPT TSQTRSGSGS GSSRSEPATV 120 MVQPCVSGFE VVVTSSASGL EAWPLSRVLE VLHEQGLEVI SSLTARVNER LMYTIQVEVN 180 SFGCFDLTWL QQKLIDELVL STTRH*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa02g044680.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493789	0.0	AB493789.1 Arabidopsis thaliana At5g51790 mRNA for hypothetical protein, partial cds, clone: RAAt5g51790.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010443732.1	1e-152	PREDICTED: transcription factor bHLH120-like isoform X2
Swissprot	Q9FLI0	1e-123	BH120_ARATH; Transcription factor bHLH120
TrEMBL	A0A1P8BH39	1e-120	A0A1P8BH39_ARATH; Basic helix-loop-helix (BHLH) DNA-binding superfamily protein
STRING	XP_010442686.1	1e-149	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2968	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	1e-123	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]