PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g047760.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 77aa    MW: 8379.76 Da    PI: 9.9728
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g047760.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00025527123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    +kC+ C+ksF +   L  H+++H
  Csa02g047760.1  5 HKCKLCSKSFCNGRALGGHMKSH 27
                    79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.77E-6328No hitNo description
PfamPF139121.2E-6527IPR007087Zinc finger, C2H2
PROSITE profilePS501579.598527IPR007087Zinc finger, C2H2
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    Send to blast
MQNKHKCKLC SKSFCNGRAL GGHMKSHLVS SQPSTRKKLA DSVHSSSCSS FDDKSLIPIL  60
DMFLSMKIEF SLGMNS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g047760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1615447e-50AL161544.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 44.
GenBankBT0041867e-50BT004186.1 Arabidopsis thaliana clone RAFL15-32-J24 (R50122) unknown protein (At4g16610) mRNA, complete cds.
GenBankBT0053927e-50BT005392.1 Arabidopsis thaliana clone U50122 unknown protein (At4g16610) mRNA, complete cds.
GenBankCP0026877e-50CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankZ973417e-50Z97341.2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002868113.14e-23zinc finger protein ZAT9
TrEMBLD7MCD98e-22D7MCD9_ARALL; Uncharacterized protein
STRINGBostr.30275s0117.1.p8e-23(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM95101421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16610.12e-21C2H2-like zinc finger protein